Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices
Figure 6
Robinson-Foulds distances between trees.
Violin plot depicting the distribution of Robinson-Foulds (RF) distance measures among all pairwise comparisons between bootstrap replicates and between the best 24 single-gene maximum likelihood trees produced by RAxML. Points are plotted on the graph to show the RF values for pairwise comparisons between the concatenated ML tree vs. the BUCKy tree, between the BUCKy tree and the 16S rRNA tree, and between the concatenated ML tree and the 16S rRNA tree.