Manifold Learning for Human Population Structure Studies
Figure 8
DNA variation pattern of the LLE-correlated, CEU specific SNPs across populations.
Raw with star denotes rare alleles (MAF≤5%), raw without star denotes common alleles (MAF>5%); (LLE) minimum or (PCA) minimum indicates that SNPs are selected by the smallest p-value; (LLE) Bonferroni or (PCA) Bonferroni indicates that SNPs are selected by the p-values around the threshold of significance after Bonferroni correction for adjusting multiple testing; (LLE) maximum or (PCA) maximum indicates SNPs are selected by the highest p-value.