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Pattern of Amino Acid Substitutions in Transmembrane Domains of β-Barrel Membrane Proteins for Detecting Remote Homologs in Bacteria and Mitochondria

Figure 2

Similarity in substitution pattern for residues in the TM region of

-barrel membrane proteins. Clustering trees showing grouping of residues in the transmembrane regions by similarity in substitution patterns. Residues are clustered by pairwise euclidean distance between the 19-dimensional vectors of instantaneous rates of residue substitutions.

Figure 2

doi: https://doi.org/10.1371/journal.pone.0026400.g002