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Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity

Table 1

Average F1 and recall scores for Centrifuge and KrakenUniq at the species level for 21 in silico and 10 biological datasets.

doi: https://doi.org/10.1371/journal.pcbi.1006863.t001