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Computational Modeling, Formal Analysis, and Tools for Systems Biology

Fig 1

Most relevant examples of computational modeling approaches introduced with toy examples.

Related tools are listed in Table 1. References for the examples are as follows: process algebras [12], compartment-based systems [21], rule-based systems [22], statecharts [23], hybrid systems [24], Boolean networks [25], Petri nets [26], agent-based models [27], lattice-based models [28].

Fig 1

doi: https://doi.org/10.1371/journal.pcbi.1004591.g001