Archive BacDiveID:10.13145/bacdive7271.20201210.5

Strain identifier

BacDive ID: 7271

Type strain:

Species: Agromyces albus

Strain history: CIP <- 2004, VKM Ac-1800

NCBI tax ID(s): 205332 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 6194

BacDive-ID: 7271

DSM-Number: 15934

keywords: Bacteria, 16S sequence, genome sequence, psychrophilic

description: Agromyces albus DSM 15934 is a psychrophilic bacterium that was isolated from phyllosphere of Androsace sp..

strain history: <- L. I. Evtushenko, VKM <- L. V. Dorofeeva

doi: 10.13145/bacdive7271.20201210.5

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinobacteria
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Microbacteriaceae
genus: Agromyces
species: Agromyces albus
full scientific name: Agromyces albus Dorofeeva et al. 2003

@ref: 6194

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Agromyces

species: Agromyces albus

full scientific name: Agromyces albus Dorofeeva et al. 2003

type strain: yes

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
6194	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
33907	MEDIUM 11 - for Agromyces	yes		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (5.000g);Yeast extract (3.000 g);Peptone (5.000 g);Di Potassium monohydrogenophosphate (0.200 g)

culture temp

@ref	growth	type	temperature	range
6194	positive	growth	24	psychrophilic
33907	positive	growth	30	mesophilic

Isolation, sampling and environmental information

isolation

@ref: 6194
sample type: phyllosphere of Androsace sp.
host species: Androsace
geographic location: Belgorod region, Central Chernozem Nature Park
country: Russia
origin.country: RUS
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Safety information

risk assessment

@ref: 6194
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 6194
description: Agromyces albus 16S ribosomal RNA gene, partial sequence
accession: AF503917
length: 1486
database: ena
NCBI tax ID: 205332

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Agromyces albus DSM 15934	GCA_004134825	scaffold	ncbi	205332
66792	Agromyces albus strain DSM 15934	205332.3	wgs	patric	205332

GC content

@ref: 6194
GC-content: 69

External links

@ref: 6194

culture collection no.: DSM 15934, UCM 623, VKM Ac-1800

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/381326
20218	http://www.straininfo.net/strains/534267

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
6194	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15934)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-15934
20215	D.Gleim, M.Kracht, N.Weiss et. al.		http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html	Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
33907	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/5861
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)