Strain identifier
BacDive ID: 5931
Type strain: 
Species: Haloferax gibbonsii
Strain Designation: Ma 2.38
Strain history: M. Kamekura <-- ATCC 33959 <-- G. Juez Ma-2.38.
NCBI tax ID(s): 1227459 (strain), 35746 (species)
General
@ref: 1666
BacDive-ID: 5931
DSM-Number: 4427
keywords: Archaea, 16S sequence, genome sequence, mesophilic
description: Haloferax gibbonsii Ma 2.38 is a mesophilic archaeon that was isolated from solar saltern.
strain history: <- B.J. Tindall <- F. Rodriguez-Valera <- G. Juez, Ma 2.38
doi: 10.13145/bacdive5931.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/euryarchaeota
- domain: Archaea
- phylum: Euryarchaeota
- class: Halobacteria
- order: Haloferacales
- family: Haloferacaceae
- genus: Haloferax
- species: Haloferax gibbonsii
- full scientific name: Haloferax gibbonsii Juez et al. 1986
@ref: 1666
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Haloferacaceae
genus: Haloferax
species: Haloferax gibbonsii
full scientific name: Haloferax gibbonsii Juez et al. 1986
strain designation: Ma 2.38
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1666
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium372.pdf
culture temp
- @ref: 1666
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 1666
- sample type: solar saltern
- geographic location: Alicante
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
Safety information
risk assessment
- @ref: 1666
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Haloferax gibbonsii gene for 16S rRNA | D13378 | 1470 | ena | 35746 |
| 20218 | Haloferax gibbonsii gene for 16S rRNA, complete sequence, strain: JCM 8863 | AB663376 | 1473 | ena | 35746 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haloferax gibbonsii ARA6 | GCA_001190965 | complete | ncbi | 35746 |
| 66792 | Haloferax gibbonsii ATCC 33959 | GCA_000336775 | contig | ncbi | 1227459 |
| 66792 | Haloferax gibbonsii ATCC 33959 | 1227459.3 | wgs | patric | 1227459 |
| 66792 | Haloferax gibbonsii strain ARA6 | 35746.8 | plasmid | patric | 35746 |
| 66792 | Haloferax gibbonsii strain ARA6 | 35746.7 | plasmid | patric | 35746 |
| 66792 | Haloferax gibbonsii strain ARA6 | 35746.10 | plasmid | patric | 35746 |
| 66792 | Haloferax gibbonsii strain ARA6 | 35746.4 | complete | patric | 35746 |
| 66792 | Haloferax gibbonsii strain ARA6 | 35746.9 | plasmid | patric | 35746 |
GC content
- @ref: 1666
- GC-content: 61.8
External links
@ref: 1666
culture collection no.: DSM 4427, ATCC 33959, NCMB 2188
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/158784 |
| 20218 | http://www.straininfo.net/strains/109983 |
| 20218 | http://www.straininfo.net/strains/158785 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1666 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4427) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4427 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |