Strain identifier
BacDive ID: 56
Type strain: 
Species: Gluconobacter cerinus
Variant: Colony variant of BacDive ID 57
Strain history: CIP <- 1988, ATCC <- IFO, Gluconobacter cerinus subsp. ammoniacus <- K. Kondo: strain 39, Gluconobacter oxydans
NCBI tax ID(s): 1307945 (strain), 38307 (species)
version 8.1 (current version)
General
@ref: 3628
BacDive-ID: 56
DSM-Number: 9533
keywords: genome sequence, Bacteria, mesophilic, motile
description: Gluconobacter cerinus DSM 9533 is a mesophilic, motile bacterium that was isolated from cherry .
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 38307 | species |
| 1307945 | strain |
strain history
| @ref | history |
|---|---|
| 3628 | <- LMG |
| 67770 | NRIC 0229 <-- IFO 3267 <-- K. Kondo 39. |
| 118215 | CIP <- 1988, ATCC <- IFO, Gluconobacter cerinus subsp. ammoniacus <- K. Kondo: strain 39, Gluconobacter oxydans |
doi: 10.13145/bacdive56.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Gluconobacter
- species: Gluconobacter cerinus
- full scientific name: Gluconobacter cerinus (ex Asai 1935) Yamada and Akita 1984
synonyms
- @ref: 20215
- synonym: Gluconobacter asaii
@ref: 3628
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Gluconobacter
species: Gluconobacter cerinus
full scientific name: Gluconobacter cerinus (ex Asai 1935) Yamada and Akita 1984 emend. Katsura et al. 2002
variant: Colony variant of BacDive ID 57
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.816 | |
| 69480 | 99.994 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 3628 | GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) | yes | https://mediadive.dsmz.de/medium/105 | Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water |
| 3628 | YPM MEDIUM (DSMZ Medium 360) | yes | https://mediadive.dsmz.de/medium/360 | Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water |
| 40542 | MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g) | |
| 118215 | CIP Medium 1 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 3628 | positive | growth | 28 | mesophilic |
| 40542 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.991 |
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 3628 | cherry (Prunus sp.) | Prunus | Osaka | Japan | JPN | Asia |
| 67770 | Prunus sp. in Osaka | Prunus sp. | Japan | JPN | Asia | |
| 118215 | Plant, Flower, Pelargonium zonale |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 3628 | 1 | Risk group (German classification) |
| 118215 | 1 | Risk group (French classification) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gluconobacter cerinus strain NBRC 3267 | 38307.4 | wgs | patric | 38307 |
| 67770 | Gluconobacter cerinus NBRC 3267 | GCA_002723935 | contig | ncbi | 38307 |
GC content
- @ref: 67770
- GC-content: 56
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 96.55 | no |
| anaerobic | no | 99.237 | no |
| halophile | no | 90.67 | no |
| spore-forming | no | 95.031 | no |
| glucose-util | yes | 91.357 | no |
| aerobic | yes | 88.579 | no |
| motile | yes | 74.836 | no |
| flagellated | no | 74.916 | no |
| thermophile | no | 98.166 | no |
| glucose-ferment | no | 86.007 | no |
External links
@ref: 3628
culture collection no.: DSM 9533, ATCC 19441, IFO 3267, LMG 1368, NBRC 3267, JCM 25108, BCRC 16009, CCM 1806, CIP 103150, DSM 9534, LMG 1361, NRIC 0229, NRRL B-4241, VTT E-011791
straininfo link
- @ref: 69741
- straininfo: 2862
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 4853173 | Metabolic consequences of a block in the synthesis of 5-keto-D-fructose in a mutant of Gluconobacter cerinus. | Mowshowitz S, Englard S, Avigad G | J Bacteriol | 10.1128/jb.119.2.363-370.1974 | 1974 | Alcohol Oxidoreductases/*biosynthesis/metabolism, Bacteria/enzymology/*metabolism, Carbon Radioisotopes, Cell-Free System, Chromatography, Paper, Fructose/metabolism, Glucose-6-Phosphate Isomerase/metabolism, Ketoses/*biosynthesis, Mutagens, *Mutation, Nitrosoguanidines, Ribose/biosynthesis, Stereoisomerism, Tritium | Enzymology |
| Phylogeny | 12361267 | Gluconobacter asaii Mason and Claus 1989 is a junior subjective synonym of Gluconobacter cerinus Yamada and Akita 1984. | Katsura K, Yamada Y, Uchimura T, Komagata K | Int J Syst Evol Microbiol | 10.1099/00207713-52-5-1635 | 2002 | Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Gluconobacter/*classification/genetics/growth & development/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Terminology as Topic | Genetics |
| Phylogeny | 15057706 | Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions. | Yukphan P, Potacharoen W, Nakagawa Y, Tanticharoen M, Yamada Y | J Gen Appl Microbiol | 10.2323/jgam.50.9 | 2004 | Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/*genetics, Deoxyribonucleases, Type II Site-Specific/metabolism, Gluconobacter/classification/*genetics/metabolism, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Sequence Alignment, Sequence Analysis, DNA | Metabolism |
| Metabolism | 23399151 | Structural analysis of fructans produced by acetic acid bacteria reveals a relation to hydrocolloid function. | Jakob F, Pfaff A, Novoa-Carballal R, Rubsam H, Becker T, Vogel RF | Carbohydr Polym | 10.1016/j.carbpol.2012.10.054 | 2012 | Acetic Acid/*metabolism, Acetobacteraceae/*metabolism, Colloids, Food Handling, Fructans/*biosynthesis/*chemistry/isolation & purification, Molecular Conformation, Molecular Weight, Structure-Activity Relationship | Enzymology |
| Biotechnology | 35631879 | Candidate Acetic Acid Bacteria Strains for Levan Production. | Anguluri K, La China S, Brugnoli M, De Vero L, Pulvirenti A, Cassanelli S, Gullo M | Polymers (Basel) | 10.3390/polym14102000 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3628 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9533) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9533 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 40542 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14916 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 69741 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID2862.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 118215 | Curators of the CIP | Collection of Institut Pasteur (CIP 103150) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103150 |