Strain identifier

BacDive ID: 5549

Type strain: Yes

Species: Flavobacterium terrigena

Strain Designation: DS-20

Strain history: CIP <- 2009, DSMZ <- J.H. Yoon, KRIBB, Taejon, Korea: strain DS-20

NCBI tax ID(s): 402734 (species)

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General

@ref: 7175

BacDive-ID: 5549

DSM-Number: 17934

keywords: Gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Flavobacterium terrigena DS-20 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 402734
  • Matching level: species

strain history

<- J.-H. Yoon, KRIBB; DS-20
<- JH Yoon, KRIBB

doi: 10.13145/bacdive5549.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium terrigena
  • full scientific name: Flavobacterium terrigena Yoon et al. 2007

@ref: 7175

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium terrigena

full scientific name: Flavobacterium terrigena Yoon et al. 2007 emend. Fujii et al. 2014 emend. Hahnke et al. 2016

strain designation: DS-20

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31993negative1.6 µm0.45 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 31993
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7175R2A MEDIUM (DSMZ Medium 830)yeshttps://bacmedia.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
33340MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
7175positivegrowth25mesophilic
31993positivegrowth10-30
31993positiveoptimum25mesophilic
33340positivegrowth30mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
31993positivegrowth06-08
31993positiveoptimum6.75

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31993aerobe
67771aerobe

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
31993286442-oxopentanoate+carbon source
319935291gelatin+carbon source
3199329987glutamate+carbon source
3199318257ornithine+carbon source
3199326271proline+carbon source
3199351850methyl pyruvate+carbon source
3199317822serine+carbon source
3199330031succinate+carbon source
3199326986threonine+carbon source
3199353424tween 20+carbon source
3199353423tween 40+carbon source
3199353425tween 60+carbon source
3199353426tween 80+carbon source

enzymes

@refvalueactivityec
31993alkaline phosphatase+3.1.3.1
31993catalase+1.11.1.6
31993gelatinase+
31993cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7175soilDokdoRepublic of KoreaKORAsia
67771From soilDokdoRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 7175
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7175
  • description: Flavobacterium terrigena strain DS-20 16S ribosomal RNA gene, partial sequence
  • accession: DQ889724
  • length: 1470
  • database: ena
  • NCBI tax ID: 402734

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium terrigena DSM 17934GCA_900108955scaffoldncbi402734
66792Flavobacterium terrigena strain DSM 17934402734.4wgspatric402734
66792Flavobacterium terrigena DSM 179342600255390draftimg402734

GC content

@refGC-contentmethod
717538.2high performance liquid chromatography (HPLC)
3199338.2
717531.2sequence analysis

External links

@ref: 7175

culture collection no.: DSM 17934, CIP 109939, KCTC 12761

straininfo link

@refpassport
20218http://www.straininfo.net/strains/718929
20218http://www.straininfo.net/strains/900969
20218http://www.straininfo.net/strains/718930

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
7175Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17934)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17934
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2824710.1099/ijs.0.64776-017473238
31993Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604128247
33340Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7739
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc