Strain identifier
BacDive ID: 5351
Type strain:
Species: Enterococcus caccae
Strain Designation: SS-1777, SS 1777, 2215-02
Strain history: CIP <- 2006, CCUG <- 2005, P. L. Shewmaker, CDC, Atlanta, Oregon, USA <- PHLS, Oregon, USA: strain 2215-02
NCBI tax ID(s): 317735 (species)
General
@ref: 7901
BacDive-ID: 5351
DSM-Number: 19114
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, spore-forming, mesophilic, Gram-positive, coccus-shaped
description: Enterococcus caccae SS-1777 is a microaerophile, spore-forming, mesophilic bacterium that was isolated from human feces.
NCBI tax id
- NCBI tax id: 317735
- Matching level: species
strain history
@ref | history |
---|---|
7901 | <- CCUG <- P.L. Shewmaker, CDC, Atlanta <- Kevin Joyce |
117088 | CIP <- 2006, CCUG <- 2005, P. L. Shewmaker, CDC, Atlanta, Oregon, USA <- PHLS, Oregon, USA: strain 2215-02 |
doi: 10.13145/bacdive5351.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Enterococcaceae
- genus: Enterococcus
- species: Enterococcus caccae
- full scientific name: Enterococcus caccae Carvalho et al. 2006
@ref: 7901
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Enterococcaceae
genus: Enterococcus
species: Enterococcus caccae
full scientific name: Enterococcus caccae Carvalho et al. 2006
strain designation: SS-1777, SS 1777, 2215-02
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
31712 | positive | coccus-shaped | no | |
69480 | no | 93.672 | ||
69480 | positive | 100 |
colony morphology
- @ref: 7901
- type of hemolysis: alpha
- hemolysis ability: 1
pigmentation
- @ref: 31712
- production: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7901 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
36502 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
117088 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7901 | positive | growth | 37 | mesophilic |
31712 | positive | growth | 45 | thermophilic |
31712 | positive | optimum | 45 | thermophilic |
36502 | positive | growth | 37 | mesophilic |
59248 | positive | growth | 30-37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
7901 | microaerophile |
31712 | anaerobe |
59248 | aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
31712 | yes | |
69481 | yes | 100 |
69480 | no | 99.834 |
observation
- @ref: 31712
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31712 | 17306 | maltose | + | carbon source |
31712 | 33942 | ribose | + | carbon source |
31712 | 17992 | sucrose | + | carbon source |
31712 | 27082 | trehalose | + | carbon source |
31712 | 4853 | esculin | + | hydrolysis |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | + | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 27082 | trehalose | + | builds acid from |
68381 | 17992 | sucrose | + | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | + | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | + | builds acid from |
68381 | 16443 | D-tagatose | + | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: yes
metabolite tests
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
7901 | catalase | - | 1.11.1.6 |
7901 | cytochrome-c oxidase | - | 1.9.3.1 |
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | + | 3.2.1.25 |
68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | + | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7901 | - | + | - | - | - | - | + | - | - | - | + | - | + | - | - | - | + | - | - | + | - | - | - | - | - | + | - | - | + | + | + | - |
7901 | - | + | - | - | - | +/- | + | - | - | +/- | + | +/- | + | - | - | - | + | - | - | + | + | + | + | - | - | + | - | - | + | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
7901 | human feces | Oregon | USA | USA | North America | ||
59248 | Human feces | Oregon | USA | USA | North America | 2000-07-01 | |
117088 | Human, Feces | Oregon | United States of America | USA | North America | 2000 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7901 | 1 | Risk group (German classification) |
117088 | 2 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 7901
- description: Enterococcus caccae strain 2215-02 16S ribosomal RNA gene, partial sequence
- accession: AY943820
- length: 1483
- database: ena
- NCBI tax ID: 317735
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Enterococcus caccae DSM 19114 | GCA_001885825 | scaffold | ncbi | 317735 |
66792 | Enterococcus caccae strain DSM 19114 | 317735.3 | wgs | patric | 317735 |
GC content
- @ref: 7901
- GC-content: 32.5
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
flagellated | no | 97.383 | no |
gram-positive | yes | 94.349 | yes |
anaerobic | no | 95.815 | no |
aerobic | no | 94.451 | no |
halophile | yes | 79.808 | no |
spore-forming | no | 82.713 | yes |
glucose-util | yes | 87.067 | no |
thermophile | no | 99.421 | no |
motile | no | 94.886 | yes |
glucose-ferment | yes | 80.301 | no |
External links
@ref: 7901
culture collection no.: DSM 19114, ATCC BAA 1240, CCUG 51564, CCM 7399, CIP 109321
straininfo link
- @ref: 74840
- straininfo: 297158
literature
- topic: Phylogeny
- Pubmed-ID: 16825620
- title: Enterococcus caccae sp. nov., isolated from human stools.
- authors: Carvalho MDGS, Shewmaker PL, Steigerwalt AG, Morey RE, Sampson AJ, Joyce K, Barrett TJ, Teixeira LM, Facklam RR
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64103-0
- year: 2006
- mesh: Bacterial Proteins/analysis/isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Electrophoresis, Polyacrylamide Gel, Enterococcus/*classification/genetics/isolation & purification/physiology, Feces/*microbiology, Genes, rRNA, Gram-Positive Bacterial Infections/microbiology, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Proteome/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Serotyping, United States
- topic2: Enzymology
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
7901 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19114) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19114 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31712 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27988 | 28776041 | |
36502 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7050 | ||||
59248 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 51564) | https://www.ccug.se/strain?id=51564 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68381 | Automatically annotated from API rID32STR | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
74840 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297158.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
117088 | Curators of the CIP | Collection of Institut Pasteur (CIP 109321) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109321 |