Strain identifier
BacDive ID: 5324
Type strain:
Species: Enterococcus dispar
Strain Designation: E18-1
Strain history: CIP <- 1993, B. Phillips, AFRC, Reading, UK: strain E18-1
NCBI tax ID(s): 1139219 (strain), 44009 (species)
General
@ref: 2636
BacDive-ID: 5324
DSM-Number: 6630
keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic
description: Enterococcus dispar E18-1 is a microaerophile, mesophilic bacterium that was isolated from human clinical source.
strain history: <- NCIMB <- M.D. Collins <- R.R. Facklam, E18-1
doi: 10.13145/bacdive5324.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/firmicutes
- domain: Bacteria
- phylum: Firmicutes
- class: Bacilli
- order: Lactobacillales
- family: Enterococcaceae
- genus: Enterococcus
- species: Enterococcus dispar
- full scientific name: Enterococcus dispar Collins et al. 1991
@ref: 2636
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Enterococcaceae
genus: Enterococcus
species: Enterococcus dispar
full scientific name: Enterococcus dispar Collins et al. 1991
strain designation: E18-1
type strain: yes
Morphology
colony morphology
- @ref: 2636
- type of hemolysis: gamma
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2636 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693), microaerophilic | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf | |
2636 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92), microaerophilic | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf | |
34408 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2636 | positive | growth | 37 | mesophilic |
34408 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
2636 | microaerophile |
51449 | microaerophile |
murein
- @ref: 2636
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2636 | + | + | - | - | + | - | + | - | - | + | + | - | - | - | - | - | + | - | + | - | - | - | - | - | - | + | - | - | + | + | - | - |
2636 | + | + | + | - | + | + | + | - | - | + | + | - | - | - | - | - | + | - | + | + | + | + | - | - | - | + | +/- | - | + | + | +/- | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
2636 | human clinical source |
51449 | Synovial fluid |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Medical environment | #Clinic |
#Host | #Human |
Safety information
risk assessment
- @ref: 2636
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Enterococcus dispar 16S rRNA gene | Y18358 | 1397 | ena | 1139219 |
2636 | Enterococcus dispar 16S ribosomal RNA gene, partial sequence | AF061007 | 1514 | ena | 1139219 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Enterococcus dispar ATCC 51266 | GCA_000406945 | scaffold | ncbi | 1139219 |
66792 | Enterococcus dispar ATCC 51266 | GCA_000407585 | contig | ncbi | 1139219 |
66792 | Enterococcus dispar DSM 6630 | GCA_001886105 | contig | ncbi | 44009 |
66792 | Enterococcus dispar ATCC 51266 [PRJNA206267] | 1139219.3 | wgs | patric | 1139219 |
66792 | Enterococcus dispar ATCC 51266 [PRJNA206362] | 1139219.4 | wgs | patric | 1139219 |
66792 | Enterococcus dispar strain DSM 6630 | 44009.3 | wgs | patric | 44009 |
GC content
- @ref: 2636
- GC-content: 39.0
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 2636
culture collection no.: DSM 6630, ATCC 51266, NCFB 2821, NCIMB 13000, CCUG 33309, CIP 103646
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/39993 |
20218 | http://www.straininfo.net/strains/115399 |
20218 | http://www.straininfo.net/strains/39995 |
20218 | http://www.straininfo.net/strains/39996 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2636 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6630) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6630 | |||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34408 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15466 | ||||
51449 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 33309) | https://www.ccug.se/strain?id=33309 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |