Strain identifier

BacDive ID: 4422

Type strain: No

Species: Escherichia coli

Strain history: CIP <- 1993, ATCC <- AMC 198

NCBI tax ID(s): 562 (species)

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General

@ref: 445

BacDive-ID: 4422

DSM-Number: 787

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Escherichia coli DSM 787 is a mesophilic human pathogen of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history: <- ATCC <- AMC, 198

doi: 10.13145/bacdive4422.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 445

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.977

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
445NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
35145MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
445positivegrowth37mesophilic
35145positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.554

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 82.425

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine-degradation

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
445+--+----+--++-++-+-+-
445+--+----+--++-++-+-+
445+--+----+--++-++-+-+
445+--+----+--++-++-+-+-
445++/--+----+--++-++-+-+-
445+--+----+--++-++-+-+-

Safety information

risk assessment

  • @ref: 445
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Escherichia coli strain ATCC 11229 16S ribosomal RNA gene, partial sequence
  • accession: GQ340751
  • length: 1362
  • database: ena
  • NCBI tax ID: 562

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli ATCC 11229GCA_010374945scaffoldncbi562
66792Escherichia coli strain ATCC 11229562.58153wgspatric562
66792Klebsiella pneumoniae strain 626573.30825wgspatric573
66792Klebsiella pneumoniae strain 626 S1573.30820wgspatric573
66792Klebsiella pneumoniae strain 626 S2573.30821wgspatric573
66792Klebsiella pneumoniae strain 626 S7573.30822wgspatric573
66792Burkholderia cenocepacia VC6823GCA_001993675contigpatric95486
66792Xanthomonas oryzae pv. oryzae JL30GCA_003296355scaffoldpatric64187
66792Clostridiales bacterium W0P9.013GCA_004556455contigpatric1898207
66792Francisella tularensis CHUGA-Ft34GCA_009813275contigpatric263
66792Vibrio cholerae C19G.bGCA_019092725contigpatric666

External links

@ref: 445

culture collection no.: DSM 787, ATCC 11229, CCUG 17931, AMC 198

straininfo link

@refpassport
20218http://www.straininfo.net/strains/11394
20218http://www.straininfo.net/strains/11393

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
445Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 787)https://www.dsmz.de/collection/catalogue/details/culture/DSM-787
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35145Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15631
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)