Strain identifier
BacDive ID: 430
Type strain: 
Species: Alicyclobacillus fastidiosus
Strain Designation: S-TAB
Strain history: IAM 15229 <-- K. Goto S-TAB.
NCBI tax ID(s): 392011 (species)
version 6
General
@ref: 7310
BacDive-ID: 430
DSM-Number: 17978
keywords: rod-shaped, Gram-positive, thermophilic, spore-forming, aerobe, Bacteria, 16S sequence
description: Alicyclobacillus fastidiosus S-TAB is an aerobe, spore-forming, thermophilic bacterium that was isolated from apple juice.
NCBI tax id
- NCBI tax id: 392011
- Matching level: species
strain history
| <- Keiichi Goto, S-TAB |
| IAM 15229 <-- K. Goto S-TAB. |
doi: 10.13145/bacdive430.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/firmicutes
- domain: Bacteria
- phylum: Firmicutes
- class: Bacilli
- order: Caryophanales
- family: Alicyclobacillaceae
- genus: Alicyclobacillus
- species: Alicyclobacillus fastidiosus
- full scientific name: Alicyclobacillus fastidiosus Goto et al. 2007
@ref: 7310
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Alicyclobacillaceae
genus: Alicyclobacillus
species: Alicyclobacillus fastidiosus
full scientific name: Alicyclobacillus fastidiosus Goto et al. 2007
strain designation: S-TAB
type strain: yes
Morphology
cell morphology
- @ref: 31943
- gram stain: positive
- cell length: 04-05 µm
- cell width: 0.9-1 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31943
- production: no
Culture and growth conditions
culture medium
- @ref: 7310
- name: BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13)
- growth: yes
- link: https://bacmedia.dsmz.de/medium/13
- composition: Name: BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13) Composition: Agar 20.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l KH2PO4 0.6 g/l MgSO4 x 7 H2O 0.5 g/l CaCl2 x 2 H2O 0.25 g/l (NH4)2SO4 0.2 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7310 | positive | growth | 45 | thermophilic |
| 31943 | positive | growth | 20-55 | |
| 31943 | positive | optimum | 40-45 | thermophilic |
| 67770 | positive | growth | 45 | thermophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31943 | positive | growth | 4.0-4.5 |
| 31943 | positive | optimum | 4.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 31943
- oxygen tolerance: aerobe
spore formation
- @ref: 31943
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31943 | NaCl | positive | growth | 0-2 % |
| 31943 | NaCl | positive | optimum | 1 % |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31943 | 22599 | arabinose | + | carbon source |
| 31943 | 33984 | fucose | + | carbon source |
| 31943 | 28260 | galactose | + | carbon source |
| 31943 | 29864 | mannitol | + | carbon source |
| 31943 | 16634 | raffinose | + | carbon source |
| 31943 | 26546 | rhamnose | + | carbon source |
| 31943 | 27082 | trehalose | + | carbon source |
| 31943 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 31943
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 7310 | apple juice | Japan | JPN | Asia |
| 67770 | Apple juice |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Beverage |
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
- @ref: 7310
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7310
- description: Alicyclobacillus fastidiosus gene for 16S ribosomal RNA, partial sequence
- accession: AB264021
- length: 1514
- database: ena
- NCBI tax ID: 392011
GC content
| @ref | GC-content | method |
|---|---|---|
| 7310 | 53.9 | |
| 67770 | 53.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 7310
culture collection no.: DSM 17978, IAM 15229, JCM 21683, NBRC 103109
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/720510 |
| 20218 | http://www.straininfo.net/strains/720511 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 7310 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17978) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17978 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 28199 | 10.1099/ijs.0.64692-0 | 17551043 | |||||
| 31943 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 28199 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |