Strain identifier

BacDive ID: 3116

Type strain: Yes

Species: Corynebacterium renale

Strain Designation: Charita a, Charita-a

Strain history: CIP <- 1990, ATCC <- NCTC <- 1948, B. Weitz: strain Charita-a

NCBI tax ID(s): 1724 (species)

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General

@ref: 9009

BacDive-ID: 3116

DSM-Number: 20688

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Corynebacterium renale Charita a is a mesophilic bacterium that was isolated from cow.

strain history: <- NCTC <- B. Weitz, Charita a

doi: 10.13145/bacdive3116.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium renale
  • full scientific name: Corynebacterium renale (Migula 1900) Ernst 1906 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium renale

@ref: 9009

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium renale

full scientific name: Corynebacterium renale (Migula 1900) Ernst 1906 emend. Nouioui et al. 2018

strain designation: Charita a

type strain: yes

Morphology

colony morphology

  • @ref: 18769
  • colony color: Ivory
  • incubation period: 10-14 days
  • medium used: ISP 6

multicellular morphology

  • @ref: 18769
  • forms multicellular complex: no
  • medium name: ISP 6

multimedia

  • @ref: 9009
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_20688.jpg
  • caption: Medium 535a 37°C
  • license or copyright: (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
18769ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
9009TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535a.pdf
9009TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
40532MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
18769positiveoptimum37mesophilic
9009positivegrowth37mesophilic
40532positivegrowth37mesophilic

Physiology and metabolism

halophily

  • @ref: 18769
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 7.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activity
1876962968cellulose-
1876916634raffinose-
1876926546rhamnose-
1876928757fructose-
1876929864mannitol-
1876917268myo-inositol-
1876918222xylose-
1876917992sucrose+
1876922599arabinose+/-
1876917234glucose+

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYGControlCAT
18769----+----+--+------
9009-+--+----+-++-------+

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18769--+-+--+-----+-----

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARA
18769---------+------+--+

Isolation, sampling and environmental information

isolation

@refsample type
9009cow
48826Cow

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Bovinae (Cow, Cattle)

Safety information

risk assessment

@refbiosafety levelbiosafety level commentpathogenicity animal
187692Risk group (German classification)
90092Risk group (German classification)yes

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218C.renale 16S ribosomal RNAM295531366ena1724
20218C.renale 16S rRNA gene (CIP 103421T)X819091395ena1724
20218Corynebacterium renale 16S rRNA gene, strain CIP 103421X842491447ena1724
20218Corynebacterium renale strain DSM 20688 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF536498312ena1724
20218Corynebacterium renale strain DSM 20688 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF536499312ena1724

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium renale NCTC7448GCA_900478035completencbi1724
66792Corynebacterium renale NCTC11140GCA_900475655completencbi1724
66792Corynebacterium renale DSM 20688GCA_002563965contigncbi1724
66792Corynebacterium renale1724.9plasmidpatric1724
66792Corynebacterium renale strain DSM 206881724.8wgspatric1724
66792Corynebacterium renale strain NCTC111401724.10completepatric1724
66792Corynebacterium renale strain NCTC74481724.11completepatric1724
66792Corynebacterium renale DSM 206882627853607permanentimg1724

External links

@ref: 9009

culture collection no.: DSM 20688, ATCC 19412, NCTC 7448, CCUG 27542

straininfo link

@refpassport
20218http://www.straininfo.net/strains/150212
20218http://www.straininfo.net/strains/100103
20218http://www.straininfo.net/strains/100104

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9009Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20688)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20688
18769Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM20688.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40532Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15217
48826Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27542)https://www.ccug.se/strain?id=27542
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)