Strain identifier
BacDive ID: 2780
Type strain: 
Species: Clostridium viride
Strain Designation: T2-7
Strain history: <- W. Buckel, Philipps-Univ. Marburg, Germany; T2-7 <- H. A. Barker, University of California, Berkeley, USA {1985}
NCBI tax ID(s): 1121344 (strain), 47246 (species)
General
@ref: 2846
BacDive-ID: 2780
DSM-Number: 6836
keywords: Bacteria, 16S sequence, genome sequence, anaerobe, mesophilic
description: Clostridium viride T2-7 is an anaerobe, mesophilic bacterium that was isolated from anaerobic sewage sludge.
strain history: <- W. Buckel, Philipps-Univ. Marburg, Germany; T2-7 <- H. A. Barker, University of California, Berkeley, USA {1985}
doi: 10.13145/bacdive2780.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/firmicutes
- domain: Bacteria
- phylum: Firmicutes
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium viride
- full scientific name: Clostridium viride Buckel et al. 1995
@ref: 2846
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium viride
full scientific name: Clostridium viride Buckel et al. 1995
strain designation: T2-7
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2846
- name: CLOSTRIDIUM VIRIDE MEDIUM (DSMZ Medium 526), anaerobic
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium526.pdf
culture temp
- @ref: 2846
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2846
- oxygen tolerance: anaerobe
compound production
| @ref | compound |
|---|---|
| 2846 | 5 hydroxyvalerate-CoA transferase |
| 2846 | 5 hydroxyvaleryl-CoA dehydratase |
| 2846 | 2,4 pentadienoyl-CoA reductase |
Isolation, sampling and environmental information
isolation
- @ref: 2846
- sample type: anaerobic sewage sludge
- geographic location: California
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Sewage sludge |
| #Condition | #Anoxic (anaerobic) |
Safety information
risk assessment
- @ref: 2846
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2846
- description: C.viride 16S rRNA gene
- accession: X81125
- length: 1482
- database: ena
- NCBI tax ID: 47246
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | [Clostridium] viride DSM 6836 | GCA_000620945 | scaffold | ncbi | 1121344 |
| 66792 | Clostridium viride DSM 6836 | 1121344.3 | wgs | patric | 1121344 |
| 66792 | Clostridium viride DSM 6836 | 2558309036 | permanent | img | 1121344 |
GC content
- @ref: 2846
- GC-content: 41.5
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 2846
culture collection no.: DSM 6836, ATCC 43977
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/113402 |
| 20218 | http://www.straininfo.net/strains/113400 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2846 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6836) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6836 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |