Strain identifier
BacDive ID: 24
Type strain:
Species: Acetobacter pasteurianus
Strain Designation: L. 1374
Strain history: NRIC 0475 <-- TUA 845B <-- IFO 13755 <-- J. De Ley <-- NCIB 8618 <-- W. Verhoeven L1374.
NCBI tax ID(s): 104098 (species)
General
@ref: 745
BacDive-ID: 24
DSM-Number: 2347
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Acetobacter pasteurianus L. 1374 is a mesophilic bacterium that was isolated from Ditch water.
NCBI tax id
- NCBI tax id: 104098
- Matching level: species
strain history
<- NCIB <- W. Verhoeven, L. 1374 |
NRIC 0475 <-- TUA 845B <-- IFO 13755 <-- J. De Ley <-- NCIB 8618 <-- W. Verhoeven L1374. |
doi: 10.13145/bacdive24.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter pasteurianus
- full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)
synonyms
@ref synonym 20215 Acetobacter paradoxus 20215 Acetobacter paradoxum 20215 Acetobacter ascendens 20215 Bacterium ascendens 20215 Acetobacter pasteurianus subsp. paradoxus 20215 Acetobacter peroxydans 20215 Mycoderma pasteurianum 20215 Acetobacter pasteurianus subsp. ascendens
@ref: 745
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter pasteurianus
full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916
strain designation: L. 1374
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 52.113 | |
69480 | 99.072 | negative |
Culture and growth conditions
culture medium
- @ref: 745
- name: ACETOBACTER PEROXYDANS MEDIUM (DSMZ Medium 254)
- growth: yes
- link: https://mediadive.dsmz.de/medium/254
- composition: Name: ACETOBACTER PEROXYDANS MEDIUM (DSMZ Medium 254) Composition: Agar 15.0 g/l Malt extract 15.0 g/l Yeast extract 5.0 g/l Ethanol Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
745 | positive | growth | 26 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.549
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 97.558
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Ditch water
- country: Netherlands
- origin.country: NLD
- continent: Europe
taxonmaps
- @ref: 69479
- File name: preview.99_5459.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_3243;98_4077;99_5459&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: AB680509
- Sequence Identity:
- Total samples: 2285
- soil counts: 222
- aquatic counts: 569
- animal counts: 1231
- plant counts: 263
Safety information
risk assessment
- @ref: 745
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acetobacter pasteurianus strain DSM 2347 16S ribosomal RNA gene, partial sequence | GQ240639 | 1326 | ena | 438 |
67770 | Acetobacter peroxydans gene for 16S rRNA, partial sequence | AB032352 | 1335 | ena | 104098 |
67770 | Acetobacter peroxydans gene for 16S rRNA, partial sequence, strain: JCM 25077 | AB665082 | 1406 | ena | 104098 |
67770 | Acetobacter peroxydans gene for 16S rRNA, partial sequence, strain: NBRC 13755 | AB680509 | 1409 | ena | 104098 |
67770 | Acetobacter peroxydans strain LMG 1635 16S ribosomal RNA gene, partial sequence | JF793969 | 1352 | ena | 104098 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter peroxydans ATCC 12874 | GCA_008125125 | scaffold | ncbi | 104098 |
66792 | Acetobacter peroxydans strain ATCC 12874 | 104098.10 | wgs | patric | 104098 |
66792 | Acetobacter peroxydans strain LMG 1635 | 104098.11 | wgs | patric | 104098 |
66792 | Acetobacter peroxydans strain NBRC 13755 | 104098.9 | wgs | patric | 104098 |
66792 | Acetobacter peroxydans ATCC 12874 | 2596583685 | draft | img | 104098 |
67770 | Acetobacter peroxydans NBRC 13755 | GCA_006539345 | contig | ncbi | 104098 |
67770 | Acetobacter peroxydans LMG 1635 | GCA_011516745 | contig | ncbi | 104098 |
66792 | Yersinia rohdei YRA | GCA_000834455 | complete | patric | 29485 |
66792 | Yersinia ruckeri KMM821 | GCA_017498685 | complete | patric | 29486 |
GC content
@ref | GC-content | method |
---|---|---|
745 | 62.5 | |
67770 | 60.3 | high performance liquid chromatography (HPLC) |
67770 | 59.7 | high performance liquid chromatography (HPLC) |
External links
@ref: 745
culture collection no.: DSM 2347, ATCC 12874, NCIB 8618, IFO 13755, JCM 25077, ATCC 12784, BCRC 12954, CCM 3615, CCUG 18131, KACC 19721, LMG 1635, NBRC 13755, NCCB 88049, NCCB 89009, NCIMB 8618, NRIC 0475
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/402 |
20218 | http://www.straininfo.net/strains/397 |
20218 | http://www.straininfo.net/strains/405 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 7765650 | Factors relevant to the production of (R)-(+)-glycidol (2,3-epoxy-1-propanol) from racemic glycidol by enantioselective oxidation with Acetobacter pasteurianus ATCC 12874. | Geerlof A, Jongejan JA, van Dooren TJ, Racemakers-Franken PC, van den Tweel WJ, Duine JA | Enzyme Microb Technol | 10.1016/0141-0229(94)90143-0 | 1994 | 1-Propanol/chemistry/metabolism, Acetobacter/*metabolism, Alcohol Oxidoreductases/metabolism, Biotechnology, Drug Stability, Epoxy Compounds/*chemistry/*metabolism, Hydrogen-Ion Concentration, Kinetics, Oxidation-Reduction, *Propanols, Stereoisomerism, Temperature | Biotechnology |
Enzymology | 27392873 | Characterization of the Enantioselective Properties of the Quinohemoprotein Alcohol Dehydrogenase of Acetobacter pasteurianus LMG 1635. 1. Different Enantiomeric Ratios of Whole Cells and Purified Enzyme in the Kinetic Resolution of Racemic Glycidol. | Machado SS, Wandel U, Jongejan JA, Straathof AJ, Duine JA | Biosci Biotechnol Biochem | 10.1271/bbb.63.10 | 1999 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
745 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2347) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2347 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |