Strain identifier

BacDive ID: 23335

Type strain: Yes

Species: Actinoallomurus vinaceus

Strain Designation: K10-0528

Strain history: A. Matsumoto K10-0528.

NCBI tax ID(s): 1080074 (species)

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General

@ref: 19172

BacDive-ID: 23335

DSM-Number: 45858

keywords: 16S sequence, Bacteria, mesophilic

description: Actinoallomurus vinaceus K10-0528 is a mesophilic bacterium that was isolated from plant root.

NCBI tax id

  • NCBI tax id: 1080074
  • Matching level: species

strain history

<- NBRC; NBRC 108763 <- Y. Takahashi, Kitasato Univ.; K10-0528
A. Matsumoto K10-0528.

doi: 10.13145/bacdive23335.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinoallomurus
  • species: Actinoallomurus vinaceus
  • full scientific name: Actinoallomurus vinaceus Koyama et al. 2012

@ref: 19172

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinoallomurus

species: Actinoallomurus vinaceus

full scientific name: Actinoallomurus vinaceus Koyama et al. 2012

strain designation: K10-0528

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
19172ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
19172GPHF-MEDIUM (DSMZ Medium 553)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf
19172GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19172positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost species
19172plant rootKanagawaJapanJPNAsia
67770Root of a perennial plant, Ophiopogon japonicusKanagawa Pref.JapanJPNAsiaOphiopogon japonicus

isolation source categories

Cat1Cat2Cat3
#Host#Plants
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_177604.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_5383;97_6498;98_8091;99_177604&stattab=map
  • Last taxonomy: Actinoallomurus vinaceus
  • 16S sequence: AB668307
  • Sequence Identity:
  • Total samples: 16
  • soil counts: 12
  • animal counts: 2
  • plant counts: 2

Safety information

risk assessment

  • @ref: 19172
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Actinoallomurus vinaceus gene for 16S ribosomal RNA, partial sequence
  • accession: AB668307
  • length: 1303
  • database: ena
  • NCBI tax ID: 1080074

GC content

  • @ref: 67770
  • GC-content: 72
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 19172

culture collection no.: DSM 45858, BCC 49425, JCM 17939, NBRC 108763

straininfo link

@refpassport
20218http://www.straininfo.net/strains/874077
20218http://www.straininfo.net/strains/874078
20218http://www.straininfo.net/strains/874079

literature

  • topic: Phylogeny
  • Pubmed-ID: 22511226
  • title: Isolation of actinomycetes from the root of the plant, Ophiopogon japonicus, and proposal of two new species, Actinoallomurus liliacearum sp. nov. and Actinoallomurus vinaceus sp. nov.
  • authors: Koyama R, Matsumoto A, Inahashi Y, Omura S, Takahashi Y
  • journal: J Antibiot (Tokyo)
  • DOI: 10.1038/ja.2012.31
  • year: 2012
  • mesh: Actinomycetales/genetics/*isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Ophiopogon/*chemistry, Phylogeny, Plant Roots, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, RNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
19172Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45858)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45858
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta