Strain identifier

BacDive ID: 23314

Type strain: Yes

Species: Streptomyces kaempferi

Strain Designation: I37

Strain history: <- KACC; KACC 15428

NCBI tax ID(s): 333725 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 19249

BacDive-ID: 23314

DSM-Number: 42089

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces kaempferi I37 is a mesophilic bacterium that was isolated from hay meadow soil.

NCBI tax id

  • NCBI tax id: 333725
  • Matching level: species

strain history: <- KACC; KACC 15428

doi: 10.13145/bacdive23314.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptomycetales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces kaempferi
  • full scientific name: Streptomyces kaempferi Santhanam et al. 2013

@ref: 19249

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces kaempferi

full scientific name: Streptomyces kaempferi Santhanam et al. 2013

strain designation: I37

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 19249
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 19249
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 19249
  • sample type: hay meadow soil
  • geographic location: Nothumberland, Cockle Park Experimental Farm, Palace Leas hay meadow plot 6
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Meadow
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3832.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_2301;99_3832&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: HE591382
  • Sequence Identity:
  • Total samples: 2480
  • soil counts: 1454
  • aquatic counts: 120
  • animal counts: 56
  • plant counts: 850

Safety information

risk assessment

  • @ref: 19249
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19249
  • description: Streptomyces kaempferi partial 16S rRNA gene, type strain I37T
  • accession: HE591382
  • length: 1462
  • database: ena
  • NCBI tax ID: 333725

GC content

  • @ref: 19249
  • GC-content: 73.0
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 19249

culture collection no.: DSM 42089, CGMCC 4.7020, KACC 15428

straininfo link

@refpassport
20218http://www.straininfo.net/strains/886925
20218http://www.straininfo.net/strains/886926

literature

  • topic: Phylogeny
  • Pubmed-ID: 22865027
  • title: Streptomyces erringtonii sp. nov. and Streptomyces kaempferi sp. nov., isolated from a hay meadow soil.
  • authors: Santhanam R, Rong X, Huang Y, Goodfellow M
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-012-9788-x
  • year: 2012
  • mesh: Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
19249Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42089)https://www.dsmz.de/collection/catalogue/details/culture/DSM-42089
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta