Strain identifier
BacDive ID: 23029
Type strain: 
Species: Cruoricaptor ignavus
Strain Designation: 2012475 No2
Strain history: <- A. F. Yassin, Inst. Med. Microbiology and Immunology, Univ. Bonn, Germany; IMMIB L-12475 <- M. Aravena-Roman, Queen Elizabeth II Medical Center, PathWest Lab. Med. , Div. of Microbiol. and Infectious Diseases, WA, Australia; strain 2012475 No2
NCBI tax ID(s): 1118202 (species)
version 8.1 (current version)
General
@ref: 19200
BacDive-ID: 23029
DSM-Number: 25479
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen
description: Cruoricaptor ignavus 2012475 No2 is a microaerophile, mesophilic human pathogen that was isolated from blood culture of a human with bacteraemia.
NCBI tax id
- NCBI tax id: 1118202
- Matching level: species
strain history
- @ref: 19200
- history: <- A. F. Yassin, Inst. Med. Microbiology and Immunology, Univ. Bonn, Germany; IMMIB L-12475 <- M. Aravena-Roman, Queen Elizabeth II Medical Center, PathWest Lab. Med. , Div. of Microbiol. and Infectious Diseases, WA, Australia; strain 2012475 No2
doi: 10.13145/bacdive23029.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Cruoricaptor
- species: Cruoricaptor ignavus
- full scientific name: Cruoricaptor ignavus Yassin et al. 2013
@ref: 19200
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Cruoricaptor
species: Cruoricaptor ignavus
full scientific name: Cruoricaptor ignavus Yassin et al. 2013
strain designation: 2012475 No2
type strain: yes
Morphology
colony morphology
- @ref: 62780
- incubation period: 2 days
Culture and growth conditions
culture medium
- @ref: 19200
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19200 | positive | growth | 28 | mesophilic |
| 62780 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62780
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 19200 | blood culture of a human with bacteraemia | Perth | Australia | AUS | Australia and Oceania | |
| 62780 | Human blood | Perth | Australia | AUS | Australia and Oceania | 2011-03-01 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Infection | #Patient | #Blood culture |
| #Host | #Human |
taxonmaps
- @ref: 69479
- File name: preview.99_6888.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17480;96_3235;97_3972;98_5070;99_6888&stattab=map
- Last taxonomy: Cruoricaptor ignavus subclade
- 16S sequence: HE614680
- Sequence Identity:
- Total samples: 2139
- soil counts: 60
- aquatic counts: 158
- animal counts: 1902
- plant counts: 19
Safety information
risk assessment
- @ref: 19200
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19200
- description: Cruoricaptor ignavus partial 16S rRNA gene, type strain IMMIB L-12475T
- accession: HE614680
- length: 1535
- database: ena
- NCBI tax ID: 1118202
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Cruoricaptor ignavus DSM 25479 | GCA_900141665 | contig | ncbi | 1118202 |
| 66792 | Cruoricaptor ignavus strain DSM 25479 | 1118202.4 | wgs | patric | 1118202 |
| 66792 | Cruoricaptor ignavus DSM 25479 | 2700988704 | draft | img | 1118202 |
GC content
- @ref: 19200
- GC-content: 45.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.644 | no |
| flagellated | no | 97.449 | no |
| gram-positive | no | 97.605 | no |
| anaerobic | no | 98.631 | yes |
| aerobic | no | 61.846 | yes |
| halophile | no | 88.068 | no |
| spore-forming | no | 96.631 | no |
| glucose-util | yes | 82.783 | no |
| thermophile | no | 91.176 | no |
| glucose-ferment | no | 91.066 | no |
External links
@ref: 19200
culture collection no.: DSM 25479, CCUG 62025, IMMIB L-12475
straininfo link
- @ref: 87269
- straininfo: 399073
literature
- topic: Phylogeny
- Pubmed-ID: 23010576
- title: Cruoricaptor ignavus gen. nov., sp. nov., a novel bacterium of the family Flavobacteriaceae isolated from blood culture of a man with bacteraemia.
- authors: Yassin AF, Inglis TJ, Hupfer H, Siering C, Schumann P, Busse HJ, Aravena-Roman M
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2012.08.003
- year: 2012
- mesh: Adult, Bacteremia/*microbiology, Bacterial Typing Techniques, Base Composition, Blood/*microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Flavobacteriaceae Infections/*microbiology, Humans, Male, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 19200 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25479) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25479 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 62780 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 62025) | https://www.ccug.se/strain?id=62025 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87269 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399073.1 | StrainInfo: A central database for resolving microbial strain identifiers |