Strain identifier
BacDive ID: 23
Type strain:
Species: Acetobacter fabarum
Strain Designation: 985, R-36330
Strain history: <- L. De Vuyst, Vrije Univ. Brussels, Belgium; 985 <- N. Camu
NCBI tax ID(s): 1307906 (strain), 483199 (species)
General
@ref: 8200
BacDive-ID: 23
DSM-Number: 19596
keywords: motile, rod-shaped, Gram-negative, colony-forming, mesophilic, Bacteria, genome sequence, 16S sequence
description: Acetobacter fabarum 985 is a mesophilic, Gram-negative, motile Proteobacterium that forms circular colonies and was isolated from cocoa bean heap fermentation.
NCBI tax id
- NCBI tax id: 483199
- Matching level: species
strain history: <- L. De Vuyst, Vrije Univ. Brussels, Belgium; 985 <- N. Camu
doi: 10.13145/bacdive23.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter fabarum
- full scientific name: Acetobacter fabarum Cleenwerck et al. 2008
@ref: 8200
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter fabarum
full scientific name: Acetobacter fabarum Cleenwerck et al. 2008
strain designation: 985, R-36330
type strain: yes
Morphology
cell morphology
- @ref: 23238
- gram stain: negative
- cell length: 1.2-3.0 µm
- cell width: 0.8 µm
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 23238
- colony size: 0.8 mm
- colony color: beige
- colony shape: circular
- incubation period: 3 days
- medium used: Z1 agar
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8200 | MANNITOL-YEAST EXTRACT-PEPTONE (DSMZ Medium 1087) | yes | https://bacmedia.dsmz.de/medium/1087 | Name: MANNITOL-YEAST EXTRACT-PEPTONE (MYP) (DSMZ Medium 1087) Composition: D-Mannitol 25.0 g/l Agar 15.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water |
23238 | Z1 agar | yes | 2 % yeast extract, 2 % calcium lactate, 1.5 % agar; w/v |
culture temp
- @ref: 8200
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23238 | 17306 | maltose | - | growth |
23238 | 65327 | D-xylose | + | growth |
23238 | 17790 | methanol | + | growth |
23238 | 16236 | ethanol | + | oxidation |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23238 | 17426 | 5-dehydro-D-gluconate | no |
23238 | 16808 | 2-dehydro-D-gluconate | no |
23238 | 18391 | D-gluconate | yes |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23238 | catalase | + | 1.11.1.6 |
23238 | cytochrome oxidase | - | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 8200
- sample type: cocoa bean heap fermentation
- country: Ghana
- origin.country: GHA
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | |
#Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
- @ref: 8200
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acetobacter fabarum gene for 16S ribosomal RNA, partial sequence, strain: LMG 24244 | AB665084 | 1412 | ena | 483199 |
8200 | Acetobacter fabarum partial 16S rRNA gene, type strain R-36330T | AM905849 | 1442 | ena | 483199 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter fabarum LMG 24244 | GCA_011516925 | contig | ncbi | 483199 |
66792 | Acetobacter fabarum strain LMG 24244 | 483199.11 | wgs | patric | 483199 |
GC content
@ref | GC-content | method |
---|---|---|
8200 | 57.6 | high performance liquid chromatography (HPLC) |
23238 | 57.60 | high performance liquid chromatography (HPLC) |
External links
@ref: 8200
culture collection no.: DSM 19596, LMG 24244
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/833549 |
20218 | http://www.straininfo.net/strains/724624 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8200 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19596) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19596 | |||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23238 | Ilse Cleenwerck, Ángel Gonzalez, Nicholas Camu, Katrien Engelbeen, Paul De Vos, Luc De Vuyst | 10.1099/ijs.0.65778-0 | Acetobacter fabarum sp. nov., an acetic acid bacterium from a Ghanaian cocoa bean heap fermentation | IJSEM 58: 2180-2185 2008 | 18768626 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |