Strain identifier
BacDive ID: 22991
Type strain: 
Species: Desulfoconvexum algidum
Strain Designation: JHA1
Strain history: M. Koenneke JHA1.
NCBI tax ID(s): 453224 (species)
version 5
General
@ref: 19252
BacDive-ID: 22991
DSM-Number: 21856
keywords: gram-negative, psychrophilic, anaerobe, Bacteria, 16S sequence, motile, rod-shaped
description: Desulfoconvexum algidum JHA1 is an anaerobe, psychrophilic, gram-negative bacterium that was isolated from permanently cold marine sediment.
strain history: <- M. Könneke, Univ. Oldenburg; JHA1 <- M. Könneke {2001}
doi: 10.13145/bacdive22991.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobacteraceae
- genus: Desulfoconvexum
- species: Desulfoconvexum algidum
- full scientific name: Desulfoconvexum algidum Könneke et al. 2013
@ref: 19252
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfoconvexum
species: Desulfoconvexum algidum
full scientific name: Desulfoconvexum algidum Könneke et al. 2013
strain designation: JHA1
type strain: yes
Morphology
cell morphology
- @ref: 30756
- gram stain: negative
- cell length: 2.25 µm
- cell width: 1.5 µm
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 19252
- incubation period: >14 days
Culture and growth conditions
culture medium
- @ref: 19252
- name: DESULFOBACTERIUM MEDIUM (DSMZ Medium 383), with strain-specific modifications, anaerobic
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium383.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19252 | positive | growth | 15 | psychrophilic |
| 30756 | positive | growth | 0-20 | psychrophilic |
| 30756 | positive | optimum | 15 | psychrophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30756 | positive | growth | 5.5-8.5 |
| 30756 | positive | optimum | 7.3 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 19252 | anaerobe |
| 30756 | anaerobe |
spore formation
- @ref: 30756
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30756 | NaCl | positive | growth | 0-5 % |
| 30756 | NaCl | positive | optimum | 2.5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30756 | 16449 | alanine | + | carbon source |
| 30756 | 28885 | butanol | + | carbon source |
| 30756 | 27689 | decanoate | + | carbon source |
| 30756 | 16236 | ethanol | + | carbon source |
| 30756 | 15740 | formate | + | carbon source |
| 30756 | 17754 | glycerol | + | carbon source |
| 30756 | 15428 | glycine | + | carbon source |
| 30756 | 24996 | lactate | + | carbon source |
| 30756 | 25115 | malate | + | carbon source |
| 30756 | 29864 | mannitol | + | carbon source |
| 30756 | 26271 | proline | + | carbon source |
| 30756 | 17822 | serine | + | carbon source |
| 30756 | 30911 | sorbitol | + | carbon source |
| 30756 | 31011 | valerate | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 19252
- sample type: permanently cold marine sediment
- geographic location: north-west coast of Svalbard, Smeerenburgfjorden
- country: Norway
- origin.country: NOR
- continent: Europe
- latitude: 79.7
- longitude: 11.0833
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
| #Condition | #Psychrophilic (<10°C) |
Safety information
risk assessment
- @ref: 19252
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19252
- description: Desulfoconvexum algidum strain JHA1 16S ribosomal RNA gene, partial sequence
- accession: EF442984
- length: 1367
- database: ena
- NCBI tax ID: 453224
GC content
| @ref | GC-content | method |
|---|---|---|
| 19252 | 46 | high performance liquid chromatography (HPLC) |
| 30756 | 46 |
External links
@ref: 19252
culture collection no.: DSM 21856, JCM 16085
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/885134 |
| 20218 | http://www.straininfo.net/strains/885135 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 19252 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21856) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21856 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 27087 | 10.1099/ijs.0.043703-0 | ||||||
| 30756 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27087 |