Strain identifier
BacDive ID: 22968
Type strain: 
Species: Salimesophilobacter vulgaris
Strain Designation: Zn2
Strain history: DSM 24770 <-- Y.-Z. Zhang Zn2.
NCBI tax ID(s): 979619 (species)
version 8.1 (current version)
General
@ref: 19292
BacDive-ID: 22968
DSM-Number: 24770
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, motile, rod-shaped
description: Salimesophilobacter vulgaris Zn2 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from wastewater of a paper mill.
NCBI tax id
- NCBI tax id: 979619
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19292 | <- Y.-Z. Zhang, Zhejiang Univ., Hangzhou, China; Zn2 |
| 67770 | DSM 24770 <-- Y.-Z. Zhang Zn2. |
doi: 10.13145/bacdive22968.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Salimesophilobacter
- species: Salimesophilobacter vulgaris
- full scientific name: Salimesophilobacter vulgaris Zhang et al. 2013
@ref: 19292
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Salimesophilobacter
species: Salimesophilobacter vulgaris
full scientific name: Salimesophilobacter vulgaris Zhang et al. 2013
strain designation: Zn2
type strain: yes
Morphology
cell morphology
- @ref: 30641
- gram stain: positive
- cell length: 3 µm
- cell width: 0.65 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 19292
- name: SALIMESOPHILOBACTER MEDIUM (DSMZ Medium 1476)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1476
- composition: Name: SALIMESOPHILOBACTER MEDIUM (DSMZ Medium 1476) Composition: NaCl 30.0 g/l K-acetate 5.0 g/l Yeast extract 5.0 g/l Trypticase peptone 5.0 g/l MgCl2 x 6 H2O 5.0 g/l NaHCO3 2.5 g/l CaCl2 x 2 H2O 1.0 g/l Na2SO4 1.0 g/l KCl 0.7 g/l Na2S x 9 H2O 0.5 g/l NH4Cl 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l KH2PO4 0.4 g/l K2HPO4 0.4 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19292 | positive | growth | 37 | mesophilic |
| 30641 | positive | growth | 10-50 | |
| 30641 | positive | optimum | 35 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30641 | positive | growth | 6-9.5 | alkaliphile |
| 30641 | positive | optimum | 7.4 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 19292 | anaerobe |
| 30641 | anaerobe |
spore formation
- @ref: 30641
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30641 | NaCl | positive | growth | 0-10 % |
| 30641 | NaCl | positive | optimum | 6 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30641 | 30089 | acetate | + | carbon source |
| 30641 | 15740 | formate | + | carbon source |
| 30641 | 17754 | glycerol | + | carbon source |
| 30641 | 17272 | propionate | + | carbon source |
| 30641 | 17814 | salicin | + | carbon source |
| 30641 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19292 | wastewater of a paper mill | Zhejiang Province, Hangzhou | China | CHN | Asia |
| 67770 | Wastewater of a paper mill |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Plant (Factory) |
| #Engineered | #Waste | #Wastewater |
taxonmaps
- @ref: 69479
- File name: preview.99_54007.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15791;96_24118;97_30181;98_38604;99_54007&stattab=map
- Last taxonomy: Salimesophilobacter vulgaris subclade
- 16S sequence: HQ880422
- Sequence Identity:
- Total samples: 299
- soil counts: 69
- aquatic counts: 142
- animal counts: 79
- plant counts: 9
Safety information
risk assessment
- @ref: 19292
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19292
- description: Salimesophilobacter vulgaris strain Zn2 16S ribosomal RNA gene, partial sequence
- accession: HQ880422
- length: 1471
- database: ena
- NCBI tax ID: 979619
GC content
| @ref | GC-content | method |
|---|---|---|
| 19292 | 37 | high performance liquid chromatography (HPLC) |
| 30641 | 37 |
External links
@ref: 19292
culture collection no.: DSM 24770, JCM 17796
straininfo link
- @ref: 87215
- straininfo: 398375
literature
- topic: Phylogeny
- Pubmed-ID: 22798649
- title: Salimesophilobacter vulgaris gen. nov., sp. nov., an anaerobic bacterium isolated from paper-mill wastewater.
- authors: Zhang YZ, Fang MX, Zhang WW, Li TT, Wu M, Zhu XF
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.040915-0
- year: 2012
- mesh: Bacteria, Anaerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Gram-Positive Bacteria/*classification/genetics/isolation & purification, Molecular Sequence Data, Paper, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Waste Water/*microbiology
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19292 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24770) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24770 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30641 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26972 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87215 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398375.1 | StrainInfo: A central database for resolving microbial strain identifiers |