Strain identifier

BacDive ID: 17675

Type strain: Yes

Species: Acetivibrio ethanolgignens

Strain Designation: 77-6

Strain history: <- ATCC <- I.M. Robinson, 77-6

NCBI tax ID(s): 290052 (species)

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General

@ref: 1269

BacDive-ID: 17675

DSM-Number: 3005

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, animal pathogen

description: Acetivibrio ethanolgignens 77-6 is an anaerobe, mesophilic animal pathogen that was isolated from colon of pig with dysentery.

NCBI tax id

  • NCBI tax id: 290052
  • Matching level: species

strain history

  • @ref: 1269
  • history: <- ATCC <- I.M. Robinson, 77-6

doi: 10.13145/bacdive17675.20230509.8

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Acetivibrio
  • species: Acetivibrio ethanolgignens
  • full scientific name: Acetivibrio ethanolgignens Robinson and Ritchie 1981
  • synonyms

    • @ref: 20215
    • synonym: Acetanaerobacter ethanolgignens

@ref: 1269

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Oscillospiraceae

genus: Acetivibrio

species: Acetivibrio ethanolgignens

full scientific name: Acetivibrio ethanolgignens Robinson and Ritchie 1981

strain designation: 77-6

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1269
  • name: PYG MEDIUM WITH VOLATILE FATTY ACIDS (DSMZ Medium 328)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/328
  • composition: Name: PYG MEDIUM WITH VOLATILE FATTY ACIDS (DSMZ Medium 328) Composition: Yeast extract 10.0 g/l Glucose 5.0 g/l Beef extract 5.0 g/l Trypticase 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l (NH4)2SO4 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.0192 g/l CaCl2 x 2 H2O 0.012 g/l Haemin 0.005 g/l Vitamin K1 0.001 g/l Resazurin 0.001 g/l iso-Valeric acid DL-2-Methylbutyric acid n-Valeric acid n-Butyric acid Propionic acid Acetic acid iso-Butyric acid Distilled water

culture temp

  • @ref: 1269
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1269
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1269
  • sample type: colon of pig with dysentery

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract#Large intestine

Safety information

risk assessment

  • @ref: 1269
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1269
  • description: Acetivibrio ethanolgignens partial 16S rRNA gene, type strain DSM 3005T
  • accession: FR749897
  • length: 1529
  • database: ena
  • NCBI tax ID: 290052

GC content

  • @ref: 1269
  • GC-content: 40.0

External links

@ref: 1269

culture collection no.: DSM 3005, ATCC 33324

straininfo link

@refpassport
20218http://www.straininfo.net/strains/3
20218http://www.straininfo.net/strains/2

literature

  • topic: Phylogeny
  • Pubmed-ID: 33892267
  • title: Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov.
  • authors: Zou Y, Xue W, Lin X, Lv M, Luo G, Dai Y, Sun H, Liu SW, Sun CH, Hu T, Xiao L
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2021.126201
  • year: 2021
  • mesh: Bacterial Typing Techniques, Base Composition, Butyric Acid/*metabolism, Clostridiales/*classification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Firmicutes/*classification/isolation & purification, Humans, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1269Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3005)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3005
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880