Strain identifier

BacDive ID: 17623

Type strain: Yes

Species: Wohlfahrtiimonas chitiniclastica

Strain Designation: S5

Strain history: <- E. M. Toth; S5

NCBI tax ID(s): 1123502 (strain), 400946 (species)

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General

@ref: 7669

BacDive-ID: 17623

DSM-Number: 18708

keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped, human pathogen

description: Wohlfahrtiimonas chitiniclastica S5 is an aerobe, mesophilic, gram-negative human pathogen that was isolated from artificial culture of Wohlfahrtia magnitica .

strain history: <- E. M. Toth; S5

doi: 10.13145/bacdive17623.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Gammaproteobacteria, not assigned to order
  • family: Gammaproteobacteria, not assigned to family
  • genus: Wohlfahrtiimonas
  • species: Wohlfahrtiimonas chitiniclastica
  • full scientific name: Wohlfahrtiimonas chitiniclastica Tóth et al. 2008

@ref: 7669

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Gammaproteobacteria, not assigned to family

genus: Wohlfahrtiimonas

species: Wohlfahrtiimonas chitiniclastica

full scientific name: Wohlfahrtiimonas chitiniclastica Tóth et al. 2008

strain designation: S5

type strain: yes

Morphology

cell morphology

  • @ref: 32329
  • gram stain: negative
  • cell length: 1.75 µm
  • cell width: 0.75 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 32329
  • production: no

Culture and growth conditions

culture medium

  • @ref: 7669
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf

culture temp

@refgrowthtypetemperaturerange
7669positivegrowth28mesophilic
32329positivegrowth28-37mesophilic
32329positiveoptimum32.5mesophilic
61233positivegrowth30mesophilic

culture pH

@refabilitytypepH
32329positivegrowth5-10.5
32329positiveoptimum7.75

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32329aerobe
61233aerobe

spore formation

  • @ref: 32329
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3232930089acetate+carbon source
3232916449alanine+carbon source
3232922653asparagine+carbon source
3232935391aspartate+carbon source
3232915740formate+carbon source
3232928757fructose+carbon source
3232929987glutamate+carbon source
3232917754glycerol+carbon source
3232928087glycogen+carbon source
3232924996lactate+carbon source
3232937684mannose+carbon source
3232918257ornithine+carbon source
3232928044phenylalanine+carbon source
3232917272propionate+carbon source
3232930031succinate+carbon source
3232926986threonine+carbon source
3232953426tween 80+carbon source

enzymes

@refvalueactivityec
32329catalase+1.11.1.6
32329cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
7669artificial culture of Wohlfahrtia magnitica (Diptera: Sarcophagidae)Wohlfahrtia magniticaBudapestHungaryHUNEurope
612333rd stage larvae of fly (Wohlfahrtia magnifica)Mezöfalva State FarmHungaryHUNEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Host#Arthropoda#Insecta

Safety information

risk assessment

  • @ref: 7669
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7669
  • description: Wohlfahrtiimonas chitiniclastica S5 partial 16S rRNA gene, type strain S5T
  • accession: AM397063
  • length: 1420
  • database: ena
  • NCBI tax ID: 1123502

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Wohlfahrtiimonas chitiniclastica BM-YGCA_001632485contigncbi400946
66792Wohlfahrtiimonas chitiniclastica DSM 18708GCA_000375345contigncbi1123502
66792Wohlfahrtiimonas chitiniclastica F9188GCA_002252195contigncbi400946
66792Wohlfahrtiimonas chitiniclastica ATCC 51249GCA_002252325contigncbi400946
66792Wohlfahrtiimonas chitiniclastica F6513GCA_002252265contigncbi400946
66792Wohlfahrtiimonas chitiniclastica F6514GCA_002252255contigncbi400946
66792Wohlfahrtiimonas chitiniclastica G9145GCA_002252145contigncbi400946
66792Wohlfahrtiimonas chitiniclastica 20GCA_001634425contigncbi400946
66792Wohlfahrtiimonas chitiniclastica F6516GCA_002252225contigncbi400946
66792Wohlfahrtiimonas chitiniclastica F6515GCA_002252245contigncbi400946
66792Wohlfahrtiimonas chitiniclastica F6512GCA_002252305contigncbi400946
66792Wohlfahrtiimonas chitiniclastica DSM 187081123502.3wgspatric1123502
66792Wohlfahrtiimonas chitiniclastica strain 20400946.6wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain ATCC 51249400946.13wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain BM-Y400946.5wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain F6512400946.14wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain F6513400946.12wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain F6514400946.11wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain F6515400946.10wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain F6516400946.9wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain F9188400946.8wgspatric400946
66792Wohlfahrtiimonas chitiniclastica strain G9145400946.7wgspatric400946
66792Wohlfahrtiimonas chitiniclastica DSM 187082517487021permanentimg1123502

GC content

  • @ref: 32329
  • GC-content: 44.3

External links

@ref: 7669

culture collection no.: DSM 18708, CCM 7401, CCUG 57199

straininfo link

@refpassport
20218http://www.straininfo.net/strains/802458
20218http://www.straininfo.net/strains/802457

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
7669Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18708)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18708
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2856310.1099/ijs.0.65324-0
32329Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28563
61233Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57199)https://www.ccug.se/strain?id=57199
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)