Strain identifier

BacDive ID: 1706

Type strain: Yes

Species: Bifidobacterium globosum

Strain Designation: RU224

Strain history: ATCC 25865 <-- V. Scardovi RU 224.

NCBI tax ID(s): 1690 (subspecies)

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General

@ref: 8518

BacDive-ID: 1706

DSM-Number: 20092

keywords: mesophilic, anaerobe, Bacteria, 16S sequence, genome sequence

description: Bifidobacterium globosum RU224 is an anaerobe, mesophilic bacterium that was isolated from rumen.

NCBI tax id

  • NCBI tax id: 1690
  • Matching level: subspecies

strain history

<- V. Scardovi, RU224
ATCC 25865 <-- V. Scardovi RU 224.

doi: 10.13145/bacdive1706.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium globosum
  • full scientific name: Bifidobacterium globosum (ex Scardovi et al. 1969) Biavati et al. 1982

  • synonyms

    • @ref: 20215
    • synonym: Bifidobacterium pseudolongum subsp. globosum

@ref: 8518

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium globosum

full scientific name: Bifidobacterium globosum (ex Scardovi et al. 1969) Biavati et al. 1982 emend. Nouioui et al. 2018

strain designation: RU224

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 8518
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@refgrowthtypetemperaturerange
8518positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 8518
  • oxygen tolerance: anaerobe

murein

  • @ref: 8518
  • murein short key: A21.02
  • type: A3ß L-Orn(L-Lys)-L-Ala2-3

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8518-----+----+/-++-----------+--++------+++------------

Isolation, sampling and environmental information

isolation

@refsample type
8518rumen
67770Rumen

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Organ
  • Cat3: #Rumen

Safety information

risk assessment

  • @ref: 8518
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bifidobacterium globosum 16S ribosomal RNAM587361488ena1690
20218Bifidobacterium globosum ATCC25865 16S-23S intergenic spacerU09524548ena1690
20218Bifidobacterium pseudolongum subsp. globosum strain DSM 20092 16S ribosomal RNA gene, partial sequenceGQ487637146ena1690
20218Bifidobacterium pseudocatenulatum gene for 16S rRNA, partial sequence, strain: JCM 5820AB116329480ena28026
20218Bifidobacterium pseudolongum subsp. globosum gene for 16S rRNA, partial sequence, strain: JCM 5820AB116332488ena1690
20218Bifidobacterium pseudolongum subsp. globosum gene for 16S rRNA, partial sequence, strain: JCM 5820AB507138693ena1690
20218Bifidobacterium pseudolongum subsp. globosum gene for 16S rRNA, partial sequence, strain: JCM 5820D861941528ena1690
20218Bifidobacterium pseudolongum subsp. globosum strain KCTC 3234 16S ribosomal RNA gene, partial sequenceGU3618281491ena1690
67770Bifidobacterium pseudolongum subsp. globosum gene for 16S ribosomal RNA, partial sequence, strain: JCM 5820LC0718341407ena1690

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium pseudolongum subsp. globosum DSM 20092 DSM 20092GCA_002706665completencbi1410605
66792Bifidobacterium pseudolongum subsp. globosum DSM 20092 DSM 20092GCA_000687595contigncbi1410605
66792Bifidobacterium pseudolongum subsp. globosum DSM 20092 DSM 20092GCA_000771145contigncbi1410605
66792Bifidobacterium pseudolongum subsp. globosum LMG 11569GCA_000741295contigncbi1690
66792Bifidobacterium pseudolongum subsp. globosum DSM 200921410605.4wgspatric1410605
66792Bifidobacterium pseudolongum subsp. globosum DSM 200921410605.3wgspatric1410605
66792Bifidobacterium pseudolongum subsp. globosum DSM 20092 strain DSM200921410605.6completepatric1410605
66792Bifidobacterium pseudolongum subsp. globosum strain LMG 115691690.4wgspatric1690
66792Bifidobacterium pseudolongum globosum DSM 200922690316232draftimg1410605
66792Bifidobacterium pseudolongum globosum DSM 200922823497638completeimg1410605
66792Bifidobacterium pseudolongum globosum LMG 115692597490251draftimg1690
66792Bifidobacterium pseudolongum globosum DSM 200922558860115draftimg1410605
67770Bifidobacterium pseudolongum subsp. globosum DSM 20092, whole genome shotgun sequencing projectJHWN00000000ncbi1410605

GC content

@refGC-contentmethod
851863.8
6777063.8thermal denaturation, midpoint method (Tm)

External links

@ref: 8518

culture collection no.: DSM 20092, ATCC 25865, JCM 5820, BCRC 14663, CCUG 34978, CCUG 39904, CGMCC 1.2203, KCTC 3234, LMG 10509, LMG 11569, NCFB 2245

straininfo link

@refpassport
20218http://www.straininfo.net/strains/38029
20218http://www.straininfo.net/strains/38026

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8518Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20092)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20092
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid