Strain identifier

BacDive ID: 16960

Type strain: No

Species: Actinomadura sp.

Strain history: <- CCUG

NCBI tax ID(s): 1989 (species)

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General

@ref: 12070

BacDive-ID: 16960

DSM-Number: 44763

keywords: Bacteria, microaerophile, mesophilic

description: Actinomadura sp. DSM 44763 is a microaerophile, mesophilic bacterium that was isolated from human sputum of 69-year old man.

NCBI tax id

  • NCBI tax id: 1989
  • Matching level: species

strain history

  • @ref: 12070
  • history: <- CCUG

doi: 10.13145/bacdive16960.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinomadura
  • species: Actinomadura sp.
  • full scientific name: Actinomadura Lechevalier and Lechevalier 1970 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Excellospora

@ref: 12070

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinomadura

species: Actinomadura sp.

full scientific name: Actinomadura sp.

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12070GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
12070N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
12070ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
57966positivegrowth37mesophilic
12070positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57966
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57966C14:01.714
    57966C15:0115
    57966C16:030.216
    57966C17:01.917
    57966C18:02.618
    57966C14:0 ISO0.413.618
    57966C16:0 10-methyl1.316.433
    57966C16:0 iso14.215.626
    57966C16:1 ω7c4.915.819
    57966C16:1 ω9c0.715.774
    57966C17:0 10-methyl2.617.41
    57966C17:1 ω8c1.216.792
    57966C18:0 ISO2.417.632
    57966C18:1 ω9c12.117.769
    57966C18:2 ω6,9c/C18:0 ANTE1.817.724
    57966C19:0 CYCLO ω9c0.818.87
    57966C20:1 ω9c0.719.77
    57966TBSA 10Me18:019.718.392
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
57966++++--+-+-----------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57966-+++-++---++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
12070human sputum of 69-year old manLinköpingSwedenSWEEurope
57966Human sputum,69-yr-old manLinköpingSwedenSWEEurope2003-05-13

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Sputum

External links

@ref: 12070

culture collection no.: DSM 44763, CCUG 48058

straininfo link

  • @ref: 85965
  • straininfo: 111240

Reference

@idauthorscataloguedoi/urltitle
12070Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44763)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44763
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
57966Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48058)https://www.ccug.se/strain?id=48058
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
85965Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID111240.1StrainInfo: A central database for resolving microbial strain identifiers