Strain identifier
BacDive ID: 16503
Type strain:
Species: Streptomyces endophyticus
Strain history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 65594 <- J. Li, Yunnan Univ., Kunming
NCBI tax ID(s): 714166 (species)
General
@ref: 16372
BacDive-ID: 16503
DSM-Number: 41984
keywords: mesophilic, spore-forming, aerobe, Bacteria, 16S sequence, gram-positive
description: Streptomyces endophyticus DSM 41984 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface-sterilized roots of Artemisia annua L..
strain history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 65594 <- J. Li, Yunnan Univ., Kunming
doi: 10.13145/bacdive16503.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinobacteria
- domain: Bacteria
- phylum: Actinobacteria
- class: Actinobacteria
- order: Streptomycetales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces endophyticus
- full scientific name: Streptomyces endophyticus Li et al. 2013
@ref: 16372
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces endophyticus
full scientific name: Streptomyces endophyticus Li et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 30422
- gram stain: positive
- cell length: 0.775 µm
- cell width: 0.42 µm
- motility: no
pigmentation
- @ref: 30422
- production: no
Culture and growth conditions
culture medium
@ref | name | growth | link |
---|---|---|---|
16372 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf |
16372 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16372 | positive | growth | 28 | mesophilic |
30422 | positive | growth | 10-37 | |
30422 | positive | optimum | 24 | psychrophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
30422 | positive | growth | 06-09 |
30422 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30422
- oxygen tolerance: aerobe
spore formation
- @ref: 30422
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30422 | NaCl | positive | growth | 0-10 % |
30422 | NaCl | positive | optimum | 5 % |
observation
- @ref: 30422
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30422 | 16449 | alanine | + | carbon source |
30422 | 22599 | arabinose | + | carbon source |
30422 | 29016 | arginine | + | carbon source |
30422 | 22653 | asparagine | + | carbon source |
30422 | 17057 | cellobiose | + | carbon source |
30422 | 28757 | fructose | + | carbon source |
30422 | 28260 | galactose | + | carbon source |
30422 | 17754 | glycerol | + | carbon source |
30422 | 15428 | glycine | + | carbon source |
30422 | 18240 | 4-hydroxy-L-proline | + | carbon source |
30422 | 17716 | lactose | + | carbon source |
30422 | 17306 | maltose | + | carbon source |
30422 | 37684 | mannose | + | carbon source |
30422 | 28044 | phenylalanine | + | carbon source |
30422 | 26546 | rhamnose | + | carbon source |
30422 | 33942 | ribose | + | carbon source |
30422 | 17822 | serine | + | carbon source |
30422 | 53424 | tween 20 | + | carbon source |
30422 | 53423 | tween 40 | + | carbon source |
30422 | 53426 | tween 80 | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30422 | catalase | + | 1.11.1.6 |
30422 | gelatinase | + | |
30422 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 16372
- sample type: surface-sterilized roots of Artemisia annua L.
- host species: Artemisia annua
- geographic location: Yunnan province, Kunming
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root (Rhizome) |
#Host Body-Site | #Plant | #Sterilized plant part |
Safety information
risk assessment
- @ref: 16372
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
16372 | Streptomyces endophyticus strain YIM 65594 16S ribosomal RNA gene, partial sequence | GU367154 | 1522 | ena | 714166 |
16372 | Streptomyces endophyticus strain RBS 05 16S ribosomal RNA gene, partial sequence | DSM_41984 | 1421 | ena | 714166 |
GC content
- @ref: 16372
- GC-content: 72
External links
@ref: 16372
culture collection no.: DSM 41984, CCTCC AA 209036, YIM 65594
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/884287 |
20218 | http://www.straininfo.net/strains/884286 |
20218 | http://www.straininfo.net/strains/884285 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
16372 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41984) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41984 | ||||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
26758 | 10.1099/ijs.0.035725-0 | ||||||
30422 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26758 |