Strain identifier
BacDive ID: 164704
Type strain: 
Species: Lentilactobacillus kribbianus
Strain history: Y.-H. Chang; ABS Res. Support Center, KRIBB, South Korea; YH-lac9.
NCBI tax ID(s): 2729622 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164704
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Lentilactobacillus kribbianus JCM 33997 is a mesophilic, Gram-positive bacterium that was isolated from Small intestine of a mini pig.
NCBI tax id
- NCBI tax id: 2729622
- Matching level: species
strain history
- @ref: 67770
- history: Y.-H. Chang; ABS Res. Support Center, KRIBB, South Korea; YH-lac9.
doi: 10.13145/bacdive164704.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lentilactobacillus
- species: Lentilactobacillus kribbianus
- full scientific name: Lentilactobacillus kribbianus Bai et al. 2020
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lentilactobacillus
species: Lentilactobacillus kribbianus
full scientific name: Lentilactobacillus kribbianus Bai et al. 2020
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 95.702 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.999 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Small intestine of a mini pig
- geographic location: daejeon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_95220.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_367;97_414;98_65350;99_95220&stattab=map
- Last taxonomy: Lentilactobacillus kribbianus subclade
- 16S sequence: MN935214
- Sequence Identity:
- Total samples: 90
- soil counts: 3
- aquatic counts: 6
- animal counts: 76
- plant counts: 5
Sequence information
16S sequences
- @ref: 67770
- description: Lactobacillus sp. strain YH-lac9 16S ribosomal RNA gene, partial sequence
- accession: MN935214
- length: 1488
- database: ena
- NCBI tax ID: 2729622
Genome sequences
- @ref: 67770
- description: Lentilactobacillus kribbianus YH-lac9
- accession: GCA_013184075
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2729622
GC content
- @ref: 67770
- GC-content: 37.8
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 95.731 | no |
| flagellated | no | 99.117 | no |
| gram-positive | yes | 96.197 | no |
| anaerobic | no | 90.546 | no |
| aerobic | no | 98.191 | no |
| halophile | yes | 90.523 | no |
| spore-forming | no | 96.174 | no |
| thermophile | no | 99.208 | no |
| glucose-util | yes | 90.81 | no |
| glucose-ferment | yes | 86.293 | no |
External links
@ref: 67770
culture collection no.: JCM 33997, KCTC 25005
literature
- topic: Phylogeny
- Pubmed-ID: 33174826
- title: Lentilactobacillus kribbianus sp. nov., isolated from the small intestine of a mini pig.
- authors: Bai L, Paek J, Shin Y, Park HY, Chang YH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004560
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Intestine, Small/*microbiology, Lactobacillaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Swine, Swine, Miniature/*microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |