Strain identifier
BacDive ID: 160866
Type strain: 
Species: Thermocladium modestius
Strain history: T. Itoh IC-125.
NCBI tax ID(s): 1293040 (strain), 62609 (species)
version 7.1
General
@ref: 67770
BacDive-ID: 160866
keywords: genome sequence, 16S sequence, Archaea, thermophilic
description: Thermocladium modestius JCM 10088 is a thermophilic archaeon that was isolated from Mud from a spring pool.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 62609 | species |
| 1293040 | strain |
strain history: T. Itoh IC-125.
doi: 10.13145/bacdive160866.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Thermoproteales
- family: Thermoproteaceae
- genus: Thermocladium
- species: Thermocladium modestius
- full scientific name: Thermocladium modestius Itoh et al. 1998
@ref: 67770
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Thermoproteales
family: Thermoproteaceae
genus: Thermocladium
species: Thermocladium modestius
full scientific name: Thermocladium modestius Itoh et al. 1998
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.748
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 67770 | positive | growth | 75 | thermophilic | |
| 69480 | thermophilic | 99.999 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 68.661
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.381
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 80.419
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Mud from a spring pool
- geographic location: Noji-onsen, Fukushima
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_191200.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17870;96_70608;97_91694;98_124610;99_191200&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: AB005296
- Sequence Identity:
- Total samples: 11
- aquatic counts: 11
Sequence information
16S sequences
- @ref: 67770
- description: Thermocladium modestius DNA for 16S rRNA, partial sequence
- accession: AB005296
- length: 1469
- database: ena
- NCBI tax ID: 62609
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermocladium modestius JCM 10088 | GCA_014646535 | scaffold | ncbi | 62609 |
| 66792 | Thermocladium modestius JCM 10088 | 2681812991 | draft | img | 1293040 |
| 67770 | Thermocladium modestius JCM 10088 JCM 10088 | GCA_001315925 | contig | ncbi | 1293040 |
GC content
- @ref: 67770
- GC-content: 52.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 10088
literature
- topic: Phylogeny
- Pubmed-ID: 9734041
- title: Thermocladium modestius gen. nov., sp. nov., a new genus of rod-shaped, extremely thermophilic crenarchaeote.
- authors: Itoh T, Suzuki K, Nakase T
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-48-3-879
- year: 1998
- mesh: Anti-Bacterial Agents/pharmacology, Base Sequence, DNA, Ribosomal/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Thermoproteaceae/*classification/isolation & purification/physiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |