Strain identifier

BacDive ID: 155189

Type strain: No

Species: Chryseobacterium sp.

NCBI tax ID(s): 1871047 (species)

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General

@ref: 61107

BacDive-ID: 155189

keywords: Bacteria, aerobe, mesophilic

description: Chryseobacterium sp. CCUG 56852 is an aerobe, mesophilic bacterium that was isolated from Human lens,60-yr-old man.

NCBI tax id

  • NCBI tax id: 1871047
  • Matching level: species

doi: 10.13145/bacdive155189.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium sp.
  • full scientific name: Chryseobacterium Vandamme et al. 1994

  • synonyms

    @refsynonym
    20215Halpernia
    20215Sejongia
    20215Soonwooa
    20215Kaistella
    20215Planobacterium
    20215Epilithonimonas

@ref: 61107

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 61107
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 61107
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    61107C16:01.516
    61107C13:0 iso0.812.612
    61107C15:0 ISO38.914.621
    61107C15:0 ISO 3OH2.616.135
    61107C16:0 3OH0.917.52
    61107C16:1 ω7c/C15:0 ISO 2OH12.115.85
    61107C17:0 iso116.629
    61107C17:0 iso 3OH15.818.161
    61107C17:1 ω9c ISO21.716.416
    61107C18:2 ω6,9c/C18:0 ANTE2.117.724
    61107unknown 13.5661.413.566
    61107unknown 16.5801.316.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
61107-+-+-++-++++---+-+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
61107----+++-+-++-+----+++

Isolation, sampling and environmental information

isolation

  • @ref: 61107
  • sample type: Human lens,60-yr-old man
  • sampling date: 2008-08-13
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body-Site#Organ#Eye
#Infection#Patient

External links

@ref: 61107

culture collection no.: CCUG 56852

straininfo link

  • @ref: 108667
  • straininfo: 411467

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
61107Curators of the CCUGhttps://www.ccug.se/strain?id=56852Culture Collection University of Gothenburg (CCUG) (CCUG 56852)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
108667Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID411467.1