Strain identifier

BacDive ID: 152753

Type strain: No

Species: Empedobacter sp.

NCBI tax ID(s): 1927715 (species)

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General

@ref: 57747

BacDive-ID: 152753

keywords: mesophilic, aerobe, Bacteria

description: Empedobacter sp. CCUG 47551 is an aerobe, mesophilic bacterium that was isolated from Human blood,81-yr-old woman.

NCBI tax id

  • NCBI tax id: 1927715
  • Matching level: species

doi: 10.13145/bacdive152753.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Empedobacter
  • species: Empedobacter sp.
  • full scientific name: Empedobacter (ex Prévot 1961) Vandamme et al. 1994

@ref: 57747

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Empedobacter

species: Empedobacter sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57747
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57747
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57747C14:0214
    57747C15:00.515
    57747C16:07.716
    57747C18:00.518
    57747C13:0 3OH/C15:1 i I/H1.214.469
    57747C13:0 iso0.412.612
    57747C14:0 2OH0.515.205
    57747C14:1 ω5c0.713.899
    57747C15:0 ISO27.714.621
    57747C15:0 ISO 3OH3.716.135
    57747C15:1 ω6c0.714.856
    57747C16:0 3OH3.117.52
    57747C16:1 ω5c6.815.908
    57747C16:1 ω7c16.815.819
    57747C17:0 iso1.616.629
    57747C17:0 iso 3OH11.618.161
    57747C17:1 ISO I/C16:0 DMA4.716.481
    57747C17:1 ω9c ISO1.916.416
    57747C18:2 ω6,9c/C18:0 ANTE0.717.724
    57747Unidentified1.112.946
    57747unknown 13.5665.613.566
    57747unknown 16.5800.516.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57747-+++-+++++++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
57747-+----+-+-+--+-----++

Isolation, sampling and environmental information

isolation

  • @ref: 57747
  • sample type: Human blood,81-yr-old woman
  • sampling date: 2003-03-01
  • geographic location: Herning
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body Product#Fluids#Blood
#Infection#Patient

External links

@ref: 57747

culture collection no.: CCUG 47551

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57747Curators of the CCUGhttps://www.ccug.se/strain?id=47551Culture Collection University of Gothenburg (CCUG) (CCUG 47551)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym