Strain identifier

BacDive ID: 15006

Type strain: No

Species: Streptomyces atroolivaceus

Strain history: KCC S-0432 <-- Y. Okami <-- SAJ <-- ISP 5211 <-- INMI 1475.

NCBI tax ID(s): 67338 (species)

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General

@ref: 9383

BacDive-ID: 15006

DSM-Number: 40211

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces atroolivaceus DSM 40211 is a mesophilic bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 67338
  • Matching level: species

strain history

@refhistory
9383<- E.B. Shirling, ISP <- N.A. Krassilnikov, INMI
67770KCC S-0432 <-- Y. Okami <-- SAJ <-- ISP 5211 <-- INMI 1475.

doi: 10.13145/bacdive15006.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces atroolivaceus
  • full scientific name: Streptomyces atroolivaceus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces atroolivaceus
    20215Actinomyces olivoviridis
    20215Streptomyces olivoviridis

@ref: 9383

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces atroolivaceus

full scientific name: Streptomyces atroolivaceus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 emend. Nouioui et al. 2018

type strain: no

Morphology

multimedia

  • @ref: 9383
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40211.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9383GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9383STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18558positiveoptimum28mesophilic
9383positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activity
1855817234glucose+
1855822599arabinose+
1855817992sucrose-
1855818222xylose-
1855817268myo-inositol-
1855829864mannitol+
1855828757fructose+
1855826546rhamnose+
1855816634raffinose-
1855862968cellulose-

enzymes

@refvalueactivityec
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18558++++++-+-++-+-++++-

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ442535
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
93831Risk group (German classification)
185581German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces olivoviridis gene for 16S rRNA, partial sequence, strain: NBRC 12897AB1842271475ena67338
20218Streptomyces olivoviridis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4432D44140120ena67338
20218Streptomyces olivoviridis strain DSM 40211 16S ribosomal RNA gene, partial sequenceGU383163779ena67338
67770Streptomyces olivoviridis strain NRRL B-3374T 16S ribosomal RNA gene, partial sequenceDQ4425351420ena67338

External links

@ref: 9383

culture collection no.: DSM 40211, ATCC 15882, ATCC 23944, CBS 928.68, IFO 12897, INMI 1475, ISP 5211, JCM 4432, JCM 4658, NBRC 12897, RIA 1157, RIA 661, BCRC 13793, CGMCC 4.1739, NRRL B-3374, VKM Ac-259, VTT E-073014

straininfo link

  • @ref: 84114
  • straininfo: 92840

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9383Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40211)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40211
18558Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40211.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84114Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92840.1StrainInfo: A central database for resolving microbial strain identifiers