Strain identifier

BacDive ID: 141738

Type strain: No

Species: Corynebacterium diphtheriae

NCBI tax ID(s): 1717 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 44867

BacDive-ID: 141738

keywords: genome sequence, Bacteria

description: Corynebacterium diphtheriae CCUG 5865 is a bacterium that was isolated from Nose swab.

NCBI tax id

  • NCBI tax id: 1717
  • Matching level: species

doi: 10.13145/bacdive141738.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium diphtheriae
  • full scientific name: Corynebacterium diphtheriae (Kruse 1886) Lehmann and Neumann 1896 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus diphtheriae

@ref: 44867

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium diphtheriae

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose+fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose+fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea+hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease+3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44867C14:01.914
    44867C15:08.615
    44867C16:033.916
    44867C18:02.718
    44867C15:1 ω6c314.856
    44867C16:1 ω7c32.115.819
    44867C17:1 ω8c1.416.792
    44867C18:1 ω9c5.617.769
    44867C18:2 ω6,9c/C18:0 ANTE10.917.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCATGLU
44867------+-----+--+---+
44867------------+--+---++

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
44867-----------------+-------+-----+

Isolation, sampling and environmental information

isolation

  • @ref: 44867
  • sample type: Nose swab
  • sampling date: 1963
  • geographic location: London
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Organ#Nose
#Infection#Patient#Swab

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium diphtheriae bv. belfanti strain CCUG 58652014537.3wgspatric2014537
66792Corynebacterium diphtheriae strain CHUV29951717.441completepatric1717

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.842no
gram-positiveyes90.812no
anaerobicno96.301no
aerobicno85.343no
halophileyes64.878no
spore-formingno93.967no
glucose-utilyes87.892no
flagellatedno97.355no
thermophileno96.283no
glucose-fermentyes75.449no

External links

@ref: 44867

culture collection no.: CCUG 5865, NCTC 10356

straininfo link

  • @ref: 97369
  • straininfo: 53089

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology18463592Antimicrobial and antioxidative activities of bioactive constituents from Hydnophytum formicarum Jack.Prachayasittikul S, Buraparuangsang P, Worachartcheewan A, Isarankura-Na-Ayudhya C, Ruchirawat S, Prachayasittikul VMolecules10.3390/molecules130409042008Animals, Anti-Infective Agents/chemistry/isolation & purification/*pharmacology, Antioxidants/chemistry/isolation & purification/*pharmacology, Bacteria/drug effects, Cell Death/drug effects, Cell Extracts, Cell Line, Tumor, Free Radical Scavengers/pharmacology, Microbial Sensitivity Tests, Plant Extracts/*pharmacology, Rubiaceae/*chemistry, Superoxide Dismutase/metabolismPhylogeny
Pathogenicity19255544Bioactive metabolites from Spilanthes acmella Murr.Prachayasittikul S, Suphapong S, Worachartcheewan A, Lawung R, Ruchirawat S, Prachayasittikul VMolecules10.3390/molecules140208502009Animals, Anti-Infective Agents/chemistry/pharmacology, Antioxidants/chemistry, Asteraceae/*chemistry, Bacteria/drug effects, Cell Line, Medicine, Traditional, Microbial Sensitivity Tests, Molecular Structure, *Plant Extracts/chemistry/pharmacology, Plants, Medicinal/*chemistry, Saccharomyces cerevisiae/drug effects
Pathogenicity21598618[Micro technologies in express diagnostics of toxigenic Corynebacterium diphtheriae strains].Kraeva LA, Zimina TM, Tseneva GIa, Solov'ev AVZh Mikrobiol Epidemiol Immunobiol2011Antigen-Antibody Complex/immunology, Antitoxins/blood/immunology, Bacterial Proteins/*analysis, Corynebacterium diphtheriae/pathogenicity, Diphtheria/blood/*diagnosis/immunology/microbiology, Diphtheria Toxin/*analysis, Hemagglutination Tests, High-Throughput Screening Assays/instrumentation/*methods, Humans, Lab-On-A-Chip Devices, Microchip Analytical Procedures/*methods, Microspheres, Polymerase Chain Reaction, Reference Standards, Sensitivity and Specificity
27857661Bioactive 4-hydroxycinnamide and bioactivities of Polyalthia cerasoides.Treeratanapiboon L, Worachartcheewan A, Suksrichavalit T, Kiatfuengfoo R, Prachayasittikul S, Ruchirawat S, Prachayasittikul VEXCLI J2011
29255382New bioactive triterpenoids and antimalarial activity of Diospyros rubra Lec.Prachayasittikul S, Saraban P, Cherdtrakulkiat R, Ruchirawat S, Prachayasittikul VEXCLI J2010
Phylogeny30174653Distinct Genomic Features Characterize Two Clades of Corynebacterium diphtheriae: Proposal of Corynebacterium diphtheriae Subsp. diphtheriae Subsp. nov. and Corynebacterium diphtheriae Subsp. lausannense Subsp. nov.Tagini F, Pillonel T, Croxatto A, Bertelli C, Koutsokera A, Lovis A, Greub GFront Microbiol10.3389/fmicb.2018.017432018

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44867Curators of the CCUGhttps://www.ccug.se/strain?id=5865Culture Collection University of Gothenburg (CCUG) (CCUG 5865)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR
97369Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID53089.1