Strain identifier

BacDive ID: 140283

Type strain: Yes

Species: Vitiosangium cumulatum

Strain Designation: MCy10943

Strain history: <- R.P. Awal, Helmholtz Institute for Pharmaceutical Research, Saarbrücken, Germany; MCy10943

NCBI tax ID(s): 1867796 (species)

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General

@ref: 42890

BacDive-ID: 140283

DSM-Number: 102952

keywords: 16S sequence, Bacteria, aerobe, chemoheterotroph, spore-forming, motile, rod-shaped

description: Vitiosangium cumulatum MCy10943 is an aerobe, chemoheterotroph, spore-forming bacterium that was isolated from soil sample provided by National College, Tribhuvan University, Nepal.

NCBI tax id

  • NCBI tax id: 1867796
  • Matching level: species

strain history

  • @ref: 42890
  • history: <- R.P. Awal, Helmholtz Institute for Pharmaceutical Research, Saarbrücken, Germany; MCy10943

doi: 10.13145/bacdive140283.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Archangiaceae
  • genus: Vitiosangium
  • species: Vitiosangium cumulatum
  • full scientific name: Vitiosangium cumulatum Awal et al. 2017

@ref: 42890

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Archangiaceae

genus: Vitiosangium

species: Vitiosangium cumulatum

full scientific name: Vitiosangium cumulatum Awal et al. 2017

strain designation: MCy10943

type strain: yes

Morphology

cell morphology

  • @ref: 43219
  • cell length: 7.0-16.0 µm
  • cell width: 0.8-0.9 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 43219
  • colony color: yellowish orange
  • medium used: buffered VY/2 agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43219buffered VY/2 agaryes
42890VY/2 AGAR (DSMZ Medium 9)yeshttps://mediadive.dsmz.de/medium/9Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43219positivegrowth22-40
42890positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43219positivegrowth6.0-9.5alkaliphile
43219positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 43219
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 43219
  • type: chemoheterotroph

spore formation

  • @ref: 43219
  • spore description: Oval to short rods
  • type of spore: myxospore
  • spore formation: yes

halophily

  • @ref: 43219
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 0.6 %(w/v)

observation

  • @ref: 43219
  • observation: Lyses bacteria and yeast

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
43219milk+hydrolysis
43219casein+hydrolysis
43219starch+hydrolysis28017
43219gelatin+hydrolysis5291
43219tween 20+hydrolysis53424
43219tween 80+hydrolysis53426
43219xylan+hydrolysis37166
43219esculin+hydrolysis4853
43219tryptophan+growth27897
43219soyton+growth
43219meat extract+growth
43219casitone+growth
43219xylose+growth18222
43219starch+growth28017
43219galactose+growth28260
43219cellobiose+growth17057
43219agar-degradation2509
43219cellulose-degradation62968
43219chitin-hydrolysis17029

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitive
4321928971ampicillinyesyes50 µg/mL
4321928669bacitracinyesyes50 µg/mL
4321971321fusidateyesyes
4321917833gentamicinyesyes
4321924753hygromycinyesyes50 µg/mL
432196104kanamycinyesyes50 µg/mL
4321981419kasugamycinyesyes50 µg/mL
432197507neomycinyesyes
4321927701oxytetracyclineyesyes
4321959062polymyxinyesyes
432193542cephalothinyesyes50 µg/mL
432199215spectinomycinyesyes50 µg/mL
4321929693thiostreptonyesyes
4321945924trimethoprimyesyes

enzymes

@refvalueactivityec
43219alkaline phosphatase+3.1.3.1
43219esterase (C 4)+
43219esterase Lipase (C 8)+
43219leucine arylamidase+3.4.11.1
43219valine arylamidase+
43219cystine arylamidase+3.4.11.3
43219trypsin+3.4.21.4
43219alpha-chymotrypsin+3.4.21.1
43219acid phosphatase+3.1.3.2
43219naphthol-AS-BI-phosphohydrolase+
43219beta-glucosidase+3.2.1.21
43219N-acetyl-beta-glucosaminidase+3.2.1.52
43219lipase (C 14)+/-
43219beta-galactosidase+/-3.2.1.23
43219alpha-galactosidase-3.2.1.22
43219beta-glucuronidase-3.2.1.31
43219alpha-glucosidase-3.2.1.20
43219alpha-mannosidase-3.2.1.24
43219alpha-fucosidase-3.2.1.51
43219catalase+1.11.1.6
43219cytochrome oxidase+1.9.3.1
43219urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43219C10:00.2
    43219C12:00.1
    43219C14:03.9
    43219C14:10.8
    43219C15:00.3
    43219C16:011.4
    43219C16:114.8
    43219C18:00.4
    43219C14:0 3OH0.2
    43219C16:0 3OH0.1
    43219C16:0 2OH0.6
    43219C16:0 OAG0.2
    43219C16:20.4
    43219C11:0 iso0.1
    43219C13:0 iso0.4
    43219C14:0 iso0.2
    43219C15:0 iso12.8
    43219C15:1 iso0.3
    43219C16:0 iso7.2
    43219C17:0 iso10.4
    43219C17:1 iso0.4
    43219C15:0 iso 3OH1.4
    43219C16:0 iso 2OH1.2
    43219C17:0 iso 2OH20.9
    43219iso-C18:0 2-OH0.1
    43219iso-C15:0 DMA3.7
    43219iso-C15:0 OAG7.1
    43219iso-C17:0 OAG0.1
  • type of FA analysis: whole cell analysis
  • incubation medium: VTM medium
  • agar/liquid: liquid
  • incubation time: 5
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
42890soil sample provided by National College, Tribhuvan University, NepalNepalNPLAsia
43219Nepalese soil sampleNepalNPLAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_28492.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_958;98_13864;99_28492&stattab=map
  • Last taxonomy: Vitiosangium cumulatum
  • 16S sequence: KX430042
  • Sequence Identity:
  • Total samples: 162
  • soil counts: 136
  • aquatic counts: 8
  • animal counts: 5
  • plant counts: 13

Safety information

risk assessment

  • @ref: 42890
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42890
  • description: Vitiosangium cumulatum strain MCy10943 16S ribosomal RNA gene, partial sequence
  • accession: KX430042
  • length: 1526
  • database: ena
  • NCBI tax ID: 1867796

GC content

  • @ref: 42890
  • GC-content: 72.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 42890

culture collection no.: DSM 102952, NCCB 100600

straininfo link

  • @ref: 96589
  • straininfo: 404313

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28141508Vitiosangium cumulatum gen. nov., sp. nov. and Vitiosangium subalbum sp. nov., soil myxobacteria, and emended descriptions of the genera Archangium and Angiococcus, and of the family Cystobacteraceae.Awal RP, Garcia R, Gemperlein K, Wink J, Kunwar B, Parajuli N, Muller RInt J Syst Evol Microbiol10.1099/ijsem.0.0018292017Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Myxococcales/*classification/genetics/isolation & purification, Nepal, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome
Pathogenicity325270182-Hydroxysorangiadenosine: Structure and Biosynthesis of a Myxobacterial Sesquiterpene-Nucleoside.Okoth DA, Hug JJ, Garcia R, Sproer C, Overmann J, Muller RMolecules10.3390/molecules251126762020Anti-Bacterial Agents/chemistry/*pharmacology, Antineoplastic Agents/chemistry/*pharmacology, Bacteria/*drug effects, Cell Proliferation, Colonic Neoplasms/*drug therapy/pathology, Microbial Sensitivity Tests, Myxococcales/*metabolism, Sesquiterpenes, Eudesmane/chemistry/isolation & purification/*pharmacology, Tumor Cells, CulturedMetabolism
Metabolism35889529Three New Stigmatellin Derivatives Reveal Biosynthetic Insights of Its Side Chain Decoration.Okoth DA, Hug JJ, Garcia R, Muller RMolecules10.3390/molecules271446562022Biosynthetic Pathways, Electron Transport, *Polyenes, Polyketide Synthases/metabolism, *Polyketides

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42890Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102952Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102952)
43219Ram Prasad Awal, Ronald Garcia, Katja Gemperlein, Joachim Wink, Bikram Kunwar, Niranjan Parajuli and Rolf MüllerVitiosangium cumulatum gen. nov., sp. nov. and Vitiosangium subalbum sp. nov., soil myxobacteria, and emended descriptions of the genera Archangium and Angiococcus, and of the family Cystobacteraceae10.1099/ijsem.0.001829IJSEM 67: 1422-1430 201728141508
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96589Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404313.1