Strain identifier

BacDive ID: 138196

Type strain: No

Species: Corynebacterium riegelii

Strain history: CIP <- 1997, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland: strain DMMZ 2582

NCBI tax ID(s): 156976 (species)

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General

@ref: 39255

BacDive-ID: 138196

keywords: Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped

description: Corynebacterium riegelii CIP 105311 is a microaerophile, mesophilic, Gram-positive bacterium of the family Corynebacteriaceae.

NCBI tax id

  • NCBI tax id: 156976
  • Matching level: species

strain history

@refhistory
392551997, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland: strain DMMZ 2582
39255CIP <- 1997, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland: strain DMMZ 2582

doi: 10.13145/bacdive138196.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium riegelii
  • full scientific name: Corynebacterium riegelii Funke et al. 1998

@ref: 39255

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium riegelii

type strain: no

Morphology

cell morphology

  • @ref: 39255
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39255

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39255MEDIUM 4 - Columbia agar with 20 % sterile defibrinated horse serumyesHorse serum (200.000 ml);Columbia agar (39.000 g);Distilled water make up to (1000.000 ml)
39255CIP Medium 4yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=4

culture temp

@refgrowthtypetemperaturerange
39255positivegrowth37mesophilic
54118positivegrowth37mesophilic
39255positivegrowth25-41
39255nogrowth10psychrophilic
39255nogrowth15psychrophilic
39255nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
54118microaerophile
54118obligate aerobe
39255obligate aerobe

halophily

  • @ref: 39255
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
39255esculin-hydrolysis4853
39255hippurate+hydrolysis606565
39255nitrate-reduction17632
39255nitrite-reduction16301
39255nitrate-respiration17632
68379nitrate-reduction17632
68379esculin-hydrolysis4853
68379urea+hydrolysis16199
68379gelatin-hydrolysis5291
68379D-glucose-fermentation17634
68379D-ribose+fermentation16988
68379D-xylose-fermentation65327
68379D-mannitol-fermentation16899
68379maltose+fermentation17306
68379lactose-fermentation17716
68379sucrose-fermentation17992
68379glycogen-fermentation28087

metabolite production

  • @ref: 39255
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3925515688acetoin-
3925517234glucose+

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15
39255oxidase+
39255beta-galactosidase-3.2.1.23
39255alcohol dehydrogenase-1.1.1.1
39255gelatinase-
39255amylase-
39255DNase-
39255caseinase-3.4.21.50
39255catalase+1.11.1.6
39255tween esterase-
39255gamma-glutamyltransferase-2.3.2.2
39255lecithinase-
39255lipase-
39255lysine decarboxylase-4.1.1.18
39255ornithine decarboxylase-4.1.1.17
39255phenylalanine ammonia-lyase-4.3.1.24
39255protease-
39255tryptophan deaminase-
39255urease+3.5.1.5
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
54118-+-------+---+--+---+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54118--++-+-+------------
39255-+++-+----++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39255----+-----+++--------+-+++++---+----+--+------+/---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39255---------++--------+----------------------------++------------++-----------+--+++---------+-+++----

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typegeographic location
39255SwitzerlandCHEEurope
54118SwitzerlandCHEEuropeHuman urinary tract infection,33-year old femaleZürich
39255SwitzerlandCHEEuropeHuman, Urine

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Infection#Disease
#Host Body-Site#Urogenital tract

Safety information

risk assessment

  • @ref: 39255
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39255

culture collection no.: CIP 105311, CCUG 38181, DMMZ 2582

straininfo link

  • @ref: 94973
  • straininfo: 53244

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39255Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105311Collection of Institut Pasteur (CIP 105311)
54118Curators of the CCUGhttps://www.ccug.se/strain?id=38181Culture Collection University of Gothenburg (CCUG) (CCUG 38181)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
94973Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID53244.1