Strain identifier
BacDive ID: 13803
Type strain: 
Species: Shimia aestuarii
Strain Designation: JC2049
Strain history: <- J Chun, Seoul Univ.
NCBI tax ID(s): 254406 (species)
General
@ref: 5792
BacDive-ID: 13803
DSM-Number: 15283
keywords: Bacteria, 16S sequence, genome sequence, mesophilic
description: Shimia aestuarii JC2049 is a mesophilic bacterium that was isolated from sediment sample of getbol.
strain history: <- J. Chun; JC2049
doi: 10.13145/bacdive13803.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Rhodobacteraceae
- genus: Shimia
- species: Shimia aestuarii
- full scientific name: Shimia aestuarii (Yi and Chun 2007) Wirth and Whitman 2018
synonyms
- @ref: 20215
- synonym: Thalassobius aestuarii
@ref: 5792
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Shimia
species: Shimia aestuarii
full scientific name: Shimia aestuarii (Yi and Chun 2007) Wirth and Whitman 2018
strain designation: JC2049
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5792
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
culture temp
- @ref: 5792
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 5792
- sample type: sediment sample of getbol
- geographic location: Korea, Ganghwa island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Aquatic | #Tidal flat |
Safety information
risk assessment
- @ref: 5792
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Thalassobius aestuarii strain JC2049 16S ribosomal RNA gene, partial sequence
- accession: AY442178
- length: 1386
- database: ena
- NCBI tax ID: 254406
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Shimia aestuarii DSM 15283 | GCA_900114635 | contig | ncbi | 254406 |
| 66792 | Shimia aestuarii strain DSM 15283 | 254406.10 | wgs | patric | 254406 |
| 66792 | Shimia aestuarii DSM 15283 | 2616644822 | permanent | img | 254406 |
External links
@ref: 5792
culture collection no.: DSM 15283, KCTC 12049
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/370450 |
| 20218 | http://www.straininfo.net/strains/370483 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5792 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15283) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15283 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |