Strain identifier
version 8.1 (current version)
General
@ref: 34091
BacDive-ID: 135143
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Sneathia sanguinegens CIP 106906 is an anaerobe, mesophilic bacterium of the family Leptotrichiaceae.
NCBI tax id
- NCBI tax id: 40543
- Matching level: species
doi: 10.13145/bacdive135143.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Leptotrichiaceae
- genus: Sneathia
- species: Sneathia sanguinegens
- full scientific name: Sneathia sanguinegens Collins et al. 2002
@ref: 34091
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Leptotrichiaceae
genus: Sneathia
species: Sneathia sanguinegens
type strain: yes
Culture and growth conditions
culture medium
- @ref: 34091
- name: MEDIUM 6 - Columbia agar with 10 % horse blood
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 34091 | positive | growth | 37 | mesophilic |
| 55147 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 55147
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | sampling date |
|---|---|---|---|---|---|---|
| 34091 | Orebro | Sweden | SWE | Europe | ||
| 55147 | Örebro | Sweden | SWE | Europe | Human blood,32-yr-old woman,complicated delivery | 1999-01-01 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Fluids | #Blood |
| #Host | #Human | #Female |
| #Infection | #Medical environment |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sneathia sanguinegens CCUG41628 | GCA_001517935 | contig | ncbi | 40543 |
| 66792 | Sneathia sanguinegens strain CCUG41628 | 40543.27 | wgs | patric | 40543 |
| 66792 | Sneathia sanguinegens CCUG41628 | 2728369525 | complete | img | 40543 |
External links
@ref: 34091
culture collection no.: CIP 106906, CCUG 41628
straininfo link
- @ref: 92554
- straininfo: 97618
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11822670 | Characterization of some strains from human clinical sources which resemble "Leptotrichia sanguinegens": description of Sneathia sanguinegens sp. nov., gen. nov. | Collins MD, Hoyles L, Tornqvist E, von Essen R, Falsen E | Syst Appl Microbiol | 10.1078/0723-2020-00047 | 2001 | Adult, Bacteremia/*microbiology, Base Sequence, Female, Gram-Negative Bacteria/*classification, Humans, Male, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Pathogenicity |
| Phylogeny | 27031261 | Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar). | Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer R | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001050 | 2016 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Ireland, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 33616512 | Sneathia vaginalis sp. nov. (Fusobacteriales, Leptotrichiaceae) as a replacement of the species 'Sneathia amnii' Harwich et al. 2012 and 'Leptotrichia amnionii' Shukla et al. 2002, and emended description of Sneathia Collins et al. 2001. | Eisenberg T, Gronow S, Falgenhauer J, Imirzalioglu C, Muhldorfer K, Rau J, Blom J, Fawzy A, Glaeser SP, Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004663 | 2021 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34091 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106906 | Collection of Institut Pasteur (CIP 106906) | |
| 55147 | Curators of the CCUG | https://www.ccug.se/strain?id=41628 | Culture Collection University of Gothenburg (CCUG) (CCUG 41628) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 92554 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID97618.1 |