Strain identifier
BacDive ID: 134216
Type strain: 
Species: Komagataeibacter kombuchae
Strain Designation: RG3
NCBI tax ID(s): 436 (species)
version 5
General
@ref: 31910
BacDive-ID: 134216
keywords: motile, gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, rod-shaped
description: Komagataeibacter hansenii RG3 is an aerobe, mesophilic, gram-negative bacterium that was isolated from plant endophyte.
doi: 10.13145/bacdive134216.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Komagataeibacter
- species: Komagataeibacter kombuchae
- full scientific name: Komagataeibacter kombuchae (Dutta and Gachhui 2007) Yamada et al. 2013
synonyms
@ref synonym 20215 Komagatabacter kombuchae 20215 Gluconacetobacter kombuchae
@ref: 31910
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Komagataeibacter
species: Komagataeibacter hansenii
strain designation: RG3
type strain: yes
Morphology
cell morphology
- @ref: 31910
- gram stain: negative
- cell length: 2.0-3.0 µm
- cell width: 0.1-0.2 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31910 | positive | growth | 30-37 | mesophilic |
| 31910 | positive | optimum | 33.5 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 31910
- oxygen tolerance: aerobe
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31910 | 16449 | alanine | + | carbon source |
| 31910 | 22599 | arabinose | + | carbon source |
| 31910 | 28885 | butanol | + | carbon source |
| 31910 | 17754 | glycerol | + | carbon source |
| 31910 | 29864 | mannitol | + | carbon source |
| 31910 | 30911 | sorbitol | + | carbon source |
| 31910 | 26986 | threonine | + | carbon source |
enzymes
- @ref: 31910
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 31910
- sample type: plant endophyte
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Other |
| #Host | #Plants |
Sequence information
16S sequences
- @ref: 31910
- description: Komagataeibacter hansenii strain RG3 16S ribosomal RNA gene, partial sequence
- accession: AY688433
- length: 1442
- database: nuccore
- NCBI tax ID: 436
GC content
- @ref: 31910
- GC-content: 55.8
External links
@ref: 31910
culture collection no.: LMG 23726, MTCC 6913
straininfo link
- @ref: 20218
- passport: http://www.straininfo.net/strains/887572
Reference
| @id | authors | title | doi/url | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 28167 | 10.1099/ijs.0.64638-0 | |||||
| 31910 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28167 |