Strain identifier

BacDive ID: 134103

Type strain: Yes

Species: Lentibacillus juripiscarius

Strain Designation: IS40-3

Strain history: CIP <- 2005, JCM <- 2003, S. Tanasupawat, Chulalongkorn Univ., Bangkok, Thailand: strain IS40-3

NCBI tax ID(s): 1293599 (strain), 257446 (species)

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General

@ref: 42496

BacDive-ID: 134103

DSM-Number: 16577

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Lentibacillus juripiscarius IS40-3 is an aerobe, spore-forming, mesophilic bacterium that was isolated from fish sauce.

NCBI tax id

NCBI tax idMatching level
257446species
1293599strain

strain history

<- T. Itoh, JCM, Riken, Wako, Saitama, Japan <- S. Tanasupawat, Chulalongkorn University, Thailand; IS40-3
S. Tanasupawat IS40-3.

doi: 10.13145/bacdive134103.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Lentibacillus
  • species: Lentibacillus juripiscarius
  • full scientific name: Lentibacillus juripiscarius Namwong et al. 2005

@ref: 42496

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Lentibacillus

species: Lentibacillus juripiscarius

full scientific name: Lentibacillus juripiscarius Namwong et al. 2005

strain designation: IS40-3

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31308positive3.75 µm0.45 µmrod-shapedno
69480positive94.381

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42496BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 80.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42172MEDIUM 204 - for Halorubrum, Marinococcus and NatrialbayesDistilled water make up to (1000.000 ml);Sodium chloride (200.000 g);Potassium chloride (2.000 g);ManganeseII chloride tetrahydrate (0.360 mg);Magnesium sulphate heptahydrate (20.000 g);Agar (20.000 g);Yeast extract (5.000 g);Ferrous chloride tetrahydrate

culture temp

@refgrowthtypetemperaturerange
42496positivegrowth30mesophilic
31308positivegrowth10-45
31308positiveoptimum37mesophilic
42172positivegrowth37
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
31308positivegrowth05-09alkaliphile
31308positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 31308
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31308yes
69480yes92.289

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
31308NaClpositivegrowth03-30 %
31308NaClpositiveoptimum10 %
69480halophilic97.983

observation

@refobservation
31308aggregates in clumps
67770quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3130828757fructose+carbon source
3130817234glucose+carbon source
3130817754glycerol+carbon source
3130833942ribose+carbon source
3130817992sucrose+carbon source
3130853426tween 80+carbon source
3130818222xylose+carbon source
3130817632nitrate+reduction

enzymes

@refvalueactivityec
31308catalase+1.11.1.6
31308cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
42496fish sauceThailandTHAAsia
67770Fish sauce (nam-pla) produced in Thailand

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production

taxonmaps

  • @ref: 69479
  • File name: preview.99_27990.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_13854;97_16868;98_20951;99_27990&stattab=map
  • Last taxonomy: Lentibacillus juripiscarius subclade
  • 16S sequence: AB127980
  • Sequence Identity:
  • Total samples: 209
  • soil counts: 30
  • aquatic counts: 42
  • animal counts: 137

Safety information

risk assessment

  • @ref: 42496
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 31308
  • description: Lentibacillus juripiscarius gene for 16S rRNA, partial sequence
  • accession: AB127980
  • length: 1524
  • database: nuccore
  • NCBI tax ID: 1293599

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lentibacillus juripiscarius JCM 121471293599.7wgspatric1293599
66792Lentibacillus juripiscarius JCM 121472728369697draftimg1293599
67770Lentibacillus juripiscarius JCM 12147 JCM 12147GCA_001311805contigncbi1293599
66792uncultured proteobacterium LaPlata-7m-b_bin-141GCA_903878545contigpatric153809

GC content

@refGC-contentmethod
3130843
6777043.4high performance liquid chromatography (HPLC)
6777044.1genome sequence analysis

External links

@ref: 42496

culture collection no.: JCM 12147, PCU 229, TISTR 1535, DSM 16577, CGMCC 1.6153, CIP 108664

straininfo link

@refpassport
20218http://www.straininfo.net/strains/382738
20218http://www.straininfo.net/strains/382739

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653893Isolation of Lentibacillus salicampi strains and Lentibacillus juripiscarius sp. nov. from fish sauce in Thailand.Namwong S, Tanasupawat S, Smitinont T, Visessanguan W, Kudo T, Itoh TInt J Syst Evol Microbiol10.1099/ijs.0.63272-02005Animals, Bacillaceae/chemistry/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fermentation, Fishes/*microbiology, Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, ThailandBiotechnology
Phylogeny16166670Lentibacillus lacisalsi sp. nov., a moderately halophilic bacterium isolated from a saline lake in China.Lim JM, Jeon CO, Song SM, Lee JC, Ju YJ, Xu LH, Jiang CL, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.63721-02005Bacillaceae/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, China, DNA, Bacterial/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium ChlorideGenetics
Phylogeny16902021Lentibacillus halophilus sp. nov., from fish sauce in Thailand.Tanasupawat S, Pakdeeto A, Namwong S, Thawai C, Kudo T, Itoh TInt J Syst Evol Microbiol10.1099/ijs.0.63997-02006Animals, Bacillaceae/chemistry/*classification/genetics/growth & development/isolation & purification, Culture Media, Cyanoacrylates/analysis, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Fermentation, Fish Products/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sodium Chloride, Species Specificity, Thailand, Vitamin K 2/analogs & derivativesCultivation
Phylogeny18676465Lentibacillus salis sp. nov., a moderately halophilic bacterium isolated from a salt lake.Lee JC, Li WJ, Xu LH, Jiang CL, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.65545-02008Bacillaceae/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sodium Chloride, Species SpecificityGenetics
Phylogeny25851835Lentibacillus garicola sp. nov., isolated from myeolchi-aekjeot, a Korean fermented anchovy sauce.Jung WY, Lee SH, Jin HM, Jeon COAntonie Van Leeuwenhoek10.1007/s10482-015-0450-22015Aerobiosis, Bacillaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, *Food Microbiology, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureBiotechnology
Phylogeny31424384Lentibacillus lipolyticus sp. nov., a moderately halophilic bacterium isolated from shrimp paste (Ka-pi).Booncharoen A, Visessanguan W, Kuncharoen N, Yiamsombut S, Santiyanont P, Mhuantong W, Charoensri S, Rojsitthisak P, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0036582019Animals, Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Crustacea/microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Food Microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood/*microbiology, Sequence Analysis, DNA, Thailand, Vitamin K 2/analogs & derivatives/chemistryBiotechnology
Phylogeny32279278Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food.Oh YJ, Kim JY, Jo HE, Park HK, Lim SK, Kwon MS, Choi HJJ Microbiol10.1007/s12275-020-9507-72020Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Brassica/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryBiotechnology

Reference

@idauthorstitledoi/urljournalpubmedID_cross_referencecatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2762310.1099/ijs.0.63272-015653893
31308Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604127623
42172Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6318
42496Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-16577Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16577)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes