Strain identifier
BacDive ID: 134103
Type strain:
Species: Lentibacillus juripiscarius
Strain Designation: IS40-3
Strain history: CIP <- 2005, JCM <- 2003, S. Tanasupawat, Chulalongkorn Univ., Bangkok, Thailand: strain IS40-3
NCBI tax ID(s): 1293599 (strain), 257446 (species)
General
@ref: 42496
BacDive-ID: 134103
DSM-Number: 16577
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped
description: Lentibacillus juripiscarius IS40-3 is an aerobe, spore-forming, mesophilic bacterium that was isolated from fish sauce.
NCBI tax id
NCBI tax id | Matching level |
---|---|
257446 | species |
1293599 | strain |
strain history
<- T. Itoh, JCM, Riken, Wako, Saitama, Japan <- S. Tanasupawat, Chulalongkorn University, Thailand; IS40-3 |
S. Tanasupawat IS40-3. |
doi: 10.13145/bacdive134103.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Lentibacillus
- species: Lentibacillus juripiscarius
- full scientific name: Lentibacillus juripiscarius Namwong et al. 2005
@ref: 42496
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Lentibacillus
species: Lentibacillus juripiscarius
full scientific name: Lentibacillus juripiscarius Namwong et al. 2005
strain designation: IS40-3
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
31308 | positive | 3.75 µm | 0.45 µm | rod-shaped | no | |
69480 | positive | 94.381 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
42496 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 80.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
42172 | MEDIUM 204 - for Halorubrum, Marinococcus and Natrialba | yes | Distilled water make up to (1000.000 ml);Sodium chloride (200.000 g);Potassium chloride (2.000 g);ManganeseII chloride tetrahydrate (0.360 mg);Magnesium sulphate heptahydrate (20.000 g);Agar (20.000 g);Yeast extract (5.000 g);Ferrous chloride tetrahydrate |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
42496 | positive | growth | 30 | mesophilic |
31308 | positive | growth | 10-45 | |
31308 | positive | optimum | 37 | mesophilic |
42172 | positive | growth | 37 | |
67770 | positive | growth | 37 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31308 | positive | growth | 05-09 | alkaliphile |
31308 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 31308
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
31308 | yes | |
69480 | yes | 92.289 |
halophily
@ref | salt | growth | tested relation | concentration | halophily level | confidence |
---|---|---|---|---|---|---|
31308 | NaCl | positive | growth | 03-30 % | ||
31308 | NaCl | positive | optimum | 10 % | ||
69480 | halophilic | 97.983 |
observation
@ref | observation |
---|---|
31308 | aggregates in clumps |
67770 | quinones: MK-7 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31308 | 28757 | fructose | + | carbon source |
31308 | 17234 | glucose | + | carbon source |
31308 | 17754 | glycerol | + | carbon source |
31308 | 33942 | ribose | + | carbon source |
31308 | 17992 | sucrose | + | carbon source |
31308 | 53426 | tween 80 | + | carbon source |
31308 | 18222 | xylose | + | carbon source |
31308 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31308 | catalase | + | 1.11.1.6 |
31308 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
42496 | fish sauce | Thailand | THA | Asia |
67770 | Fish sauce (nam-pla) produced in Thailand |
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
taxonmaps
- @ref: 69479
- File name: preview.99_27990.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_13854;97_16868;98_20951;99_27990&stattab=map
- Last taxonomy: Lentibacillus juripiscarius subclade
- 16S sequence: AB127980
- Sequence Identity:
- Total samples: 209
- soil counts: 30
- aquatic counts: 42
- animal counts: 137
Safety information
risk assessment
- @ref: 42496
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 31308
- description: Lentibacillus juripiscarius gene for 16S rRNA, partial sequence
- accession: AB127980
- length: 1524
- database: nuccore
- NCBI tax ID: 1293599
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lentibacillus juripiscarius JCM 12147 | 1293599.7 | wgs | patric | 1293599 |
66792 | Lentibacillus juripiscarius JCM 12147 | 2728369697 | draft | img | 1293599 |
67770 | Lentibacillus juripiscarius JCM 12147 JCM 12147 | GCA_001311805 | contig | ncbi | 1293599 |
66792 | uncultured proteobacterium LaPlata-7m-b_bin-141 | GCA_903878545 | contig | patric | 153809 |
GC content
@ref | GC-content | method |
---|---|---|
31308 | 43 | |
67770 | 43.4 | high performance liquid chromatography (HPLC) |
67770 | 44.1 | genome sequence analysis |
External links
@ref: 42496
culture collection no.: JCM 12147, PCU 229, TISTR 1535, DSM 16577, CGMCC 1.6153, CIP 108664
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/382738 |
20218 | http://www.straininfo.net/strains/382739 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15653893 | Isolation of Lentibacillus salicampi strains and Lentibacillus juripiscarius sp. nov. from fish sauce in Thailand. | Namwong S, Tanasupawat S, Smitinont T, Visessanguan W, Kudo T, Itoh T | Int J Syst Evol Microbiol | 10.1099/ijs.0.63272-0 | 2005 | Animals, Bacillaceae/chemistry/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fermentation, Fishes/*microbiology, Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Thailand | Biotechnology |
Phylogeny | 16166670 | Lentibacillus lacisalsi sp. nov., a moderately halophilic bacterium isolated from a saline lake in China. | Lim JM, Jeon CO, Song SM, Lee JC, Ju YJ, Xu LH, Jiang CL, Kim CJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.63721-0 | 2005 | Bacillaceae/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, China, DNA, Bacterial/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride | Genetics |
Phylogeny | 16902021 | Lentibacillus halophilus sp. nov., from fish sauce in Thailand. | Tanasupawat S, Pakdeeto A, Namwong S, Thawai C, Kudo T, Itoh T | Int J Syst Evol Microbiol | 10.1099/ijs.0.63997-0 | 2006 | Animals, Bacillaceae/chemistry/*classification/genetics/growth & development/isolation & purification, Culture Media, Cyanoacrylates/analysis, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Fermentation, Fish Products/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sodium Chloride, Species Specificity, Thailand, Vitamin K 2/analogs & derivatives | Cultivation |
Phylogeny | 18676465 | Lentibacillus salis sp. nov., a moderately halophilic bacterium isolated from a salt lake. | Lee JC, Li WJ, Xu LH, Jiang CL, Kim CJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.65545-0 | 2008 | Bacillaceae/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sodium Chloride, Species Specificity | Genetics |
Phylogeny | 25851835 | Lentibacillus garicola sp. nov., isolated from myeolchi-aekjeot, a Korean fermented anchovy sauce. | Jung WY, Lee SH, Jin HM, Jeon CO | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0450-2 | 2015 | Aerobiosis, Bacillaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, *Food Microbiology, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Biotechnology |
Phylogeny | 31424384 | Lentibacillus lipolyticus sp. nov., a moderately halophilic bacterium isolated from shrimp paste (Ka-pi). | Booncharoen A, Visessanguan W, Kuncharoen N, Yiamsombut S, Santiyanont P, Mhuantong W, Charoensri S, Rojsitthisak P, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003658 | 2019 | Animals, Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Crustacea/microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Food Microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood/*microbiology, Sequence Analysis, DNA, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Biotechnology |
Phylogeny | 32279278 | Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food. | Oh YJ, Kim JY, Jo HE, Park HK, Lim SK, Kwon MS, Choi HJ | J Microbiol | 10.1007/s12275-020-9507-7 | 2020 | Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Brassica/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Biotechnology |
Reference
@id | authors | title | doi/url | journal | pubmed | ID_cross_reference | catalogue |
---|---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
27623 | 10.1099/ijs.0.63272-0 | 15653893 | |||||
31308 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28776041 | 27623 | ||
42172 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6318 | |||||
42496 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16577 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16577) | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |