Strain identifier
BacDive ID: 133979
Type strain: 
Species: Myroides aquimaris
Strain Designation: SW105
Strain history: L. Song SW105.
NCBI tax ID(s): 1159016 (species)
version 6
General
@ref: 30989
BacDive-ID: 133979
keywords: Gram-negative, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped
description: Myroides aquimaris SW105 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1159016
- Matching level: species
strain history: L. Song SW105.
doi: 10.13145/bacdive133979.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidetes
- domain: Bacteria
- phylum: Bacteroidetes
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Myroides
- species: Myroides aquimaris
- full scientific name: Myroides aquimaris García-López et al. 2020
synonyms
- @ref: 20215
- synonym: Flavobacterium marinum
@ref: 30989
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium marinum
strain designation: SW105
type strain: yes
Morphology
cell morphology
- @ref: 30989
- gram stain: negative
- cell length: 2.75 µm
- cell width: 0.4 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30989
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30989 | positive | growth | 15-45 | |
| 30989 | positive | optimum | 35 | mesophilic |
| 67770 | positive | growth | 35 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30989 | positive | growth | 5.5-8.5 |
| 30989 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 30989
- oxygen tolerance: aerobe
spore formation
- @ref: 30989
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30989 | NaCl | positive | growth | 0-5 % |
| 30989 | NaCl | positive | optimum | 1.25 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30989 | 16449 | alanine | + | carbon source |
| 30989 | 22599 | arabinose | + | carbon source |
| 30989 | 35391 | aspartate | + | carbon source |
| 30989 | 17057 | cellobiose | + | carbon source |
| 30989 | 29987 | glutamate | + | carbon source |
| 30989 | 28087 | glycogen | + | carbon source |
| 30989 | 24996 | lactate | + | carbon source |
| 30989 | 17716 | lactose | + | carbon source |
| 30989 | 17306 | maltose | + | carbon source |
| 30989 | 29864 | mannitol | + | carbon source |
| 30989 | 37684 | mannose | + | carbon source |
| 30989 | 506227 | N-acetylglucosamine | + | carbon source |
| 30989 | 26271 | proline | + | carbon source |
| 30989 | 17822 | serine | + | carbon source |
| 30989 | 30911 | sorbitol | + | carbon source |
| 30989 | 27082 | trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30989 | acid phosphatase | + | 3.1.3.2 |
| 30989 | alkaline phosphatase | + | 3.1.3.1 |
| 30989 | catalase | + | 1.11.1.6 |
| 30989 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30989
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Sequence information
16S sequences
- @ref: 30989
- description: Flavobacterium marinum strain SW105 16S ribosomal RNA gene, partial sequence
- accession: JN867054
- length: 1508
- database: nuccore
- NCBI tax ID: 1159016
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Flavobacterium marinum CGMCC 1.10825 | GCA_900108395 | scaffold | ncbi | 1159016 |
| 66792 | Flavobacterium marinum strain CGMCC 1.10825 | 1159016.3 | wgs | patric | 1159016 |
| 66792 | Flavobacterium marinum CGMCC 1.10825 | 2596583585 | draft | img | 1159016 |
| 67770 | Flavobacterium marinum strain CGMCC 1.10825, whole genome shotgun sequencing project | FNXE00000000 | ncbi | 1159016 |
GC content
- @ref: 30989
- GC-content: 36.2
External links
@ref: 30989
culture collection no.: CGMCC 1.10825, JCM 18132
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/889913 |
| 20218 | http://www.straininfo.net/strains/891318 |
Reference
| @id | authors | title | doi/url | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 27319 | 10.1099/ijs.0.049080-0 | 23563232 | ||||
| 30989 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28776041 | 27319 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |