Strain identifier

BacDive ID: 133888

Type strain: Yes

Species: Falsirhodobacter halotolerans

Strain Designation: JA744

Strain history: <- Ch Sasikala, JNT Univ., India

NCBI tax ID(s): 1146892 (species)

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General

@ref: 30775

BacDive-ID: 133888

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Falsirhodobacter halotolerans JA744 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1146892
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Ch Sasikala, JNT Univ., India

doi: 10.13145/bacdive133888.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Falsirhodobacter
  • species: Falsirhodobacter halotolerans
  • full scientific name: Falsirhodobacter halotolerans Subhash et al. 2013

@ref: 30775

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Falsirhodobacter

species: Falsirhodobacter halotolerans

strain designation: JA744

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
30775negativerod-shapedyes
67771negative

pigmentation

  • @ref: 30775
  • production: yes

Culture and growth conditions

culture temp

  • @ref: 67771
  • growth: positive
  • type: growth
  • temperature: 25-30
  • range: mesophilic

culture pH

@refabilitytypepHPH range
30775positivegrowth6.0-8.5alkaliphile
30775positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30775aerobe
67771aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3077522599arabinose+carbon source
3077528757fructose+carbon source
3077528260galactose+carbon source
3077517234glucose+carbon source
3077529987glutamate+carbon source
3077524996lactate+carbon source
3077537684mannose+carbon source
3077515361pyruvate+carbon source
3077530911sorbitol+carbon source
3077530031succinate+carbon source
3077527082trehalose+carbon source
3077553423tween 40+carbon source

enzymes

@refvalueactivityec
30775catalase+1.11.1.6
30775cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
30775soil
67771From soil, Humma salt pan OrissaIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_47874.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_3224;97_18550;98_23097;99_47874&stattab=map
  • Last taxonomy: Falsirhodobacter halotolerans
  • 16S sequence: HE662814
  • Sequence Identity:
  • Total samples: 1803
  • soil counts: 74
  • aquatic counts: 1379
  • animal counts: 307
  • plant counts: 43

Sequence information

16S sequences

  • @ref: 30775
  • description: Falsirhodobacter halotolerans partial 16S rRNA gene, type strain JA744T
  • accession: HE662814
  • length: 1357
  • database: nuccore
  • NCBI tax ID: 1146892

Genome sequences

  • @ref: 66792
  • description: Falsirhodobacter halotolerans KCTC 32158
  • accession: GCA_022899245
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1146892

GC content

@refGC-contentmethod
3077575
6777174.0-76.0high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno95.279no
gram-positiveno97.766yes
anaerobicno96.842no
aerobicyes88.998yes
halophileno75.201no
spore-formingno97.383no
motileno63.033yes
glucose-fermentno85.074no
thermophileno98.592no
glucose-utilyes87.512yes

External links

@ref: 30775

culture collection no.: KCTC 32158, NBRC 108897

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23104358Falsirhodobacter halotolerans gen. nov., sp. nov., isolated from dry soils of a solar saltern.Subhash Y, Tushar L, Sasikala C, Ramana CVInt J Syst Evol Microbiol10.1099/ijs.0.044107-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Triterpenes/analysisGenetics
Phylogeny25424484Falsirhodobacter deserti sp. nov., isolated from sandy soil.Wang L, Zhou Z, Wu G, Chen M, Lin M, Zhang W, Chen WInt J Syst Evol Microbiol10.1099/ijs.0.068262-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Desert Climate, Fatty Acids/chemistry, Heterotrophic Processes, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Tamaricaceae/*microbiologyGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30775Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172710628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/