Strain identifier
BacDive ID: 133695
Type strain: 
Species: Nocardia pigrifrangens
Strain Designation: 7031
NCBI tax ID(s): 113618 (species)
version 8.1 (current version)
General
@ref: 30181
BacDive-ID: 133695
keywords: 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped
description: Nocardia pigrifrangens 7031 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from contaminated agar plate.
NCBI tax id
- NCBI tax id: 113618
- Matching level: species
doi: 10.13145/bacdive133695.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia pigrifrangens
- full scientific name: Nocardia pigrifrangens Wang et al. 2004
@ref: 30181
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Nocardia
species: Nocardia pigrifrangens
strain designation: 7031
type strain: yes
Morphology
cell morphology
- @ref: 30181
- gram stain: positive
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30181
- production: yes
Culture and growth conditions
culture temp
- @ref: 30181
- growth: positive
- type: growth
- temperature: 18-35
Physiology and metabolism
oxygen tolerance
- @ref: 30181
- oxygen tolerance: aerobe
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30181 | 16193 | 3-hydroxybenzoate | + | carbon source |
| 30181 | 30089 | acetate | + | carbon source |
| 30181 | 22599 | arabinose | + | carbon source |
| 30181 | 17057 | cellobiose | + | carbon source |
| 30181 | 16236 | ethanol | + | carbon source |
| 30181 | 28757 | fructose | + | carbon source |
| 30181 | 24265 | gluconate | + | carbon source |
| 30181 | 17234 | glucose | + | carbon source |
| 30181 | 17754 | glycerol | + | carbon source |
| 30181 | 28087 | glycogen | + | carbon source |
| 30181 | 37684 | mannose | + | carbon source |
| 30181 | 15361 | pyruvate | + | carbon source |
| 30181 | 33942 | ribose | + | carbon source |
| 30181 | 17814 | salicin | + | carbon source |
| 30181 | 30031 | succinate | + | carbon source |
| 30181 | 17992 | sucrose | + | carbon source |
| 30181 | 27082 | trehalose | + | carbon source |
| 30181 | 18222 | xylose | + | carbon source |
| 30181 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30181 | catalase | + | 1.11.1.6 |
| 30181 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 30181
- sample type: contaminated agar plate
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Engineered | #Laboratory | #Lab enrichment |
Sequence information
16S sequences
- @ref: 30181
- description: Nocardia pigrifrangens strain 7031 16S ribosomal RNA gene, partial sequence
- accession: AF219974
- length: 1424
- database: nuccore
- NCBI tax ID: 113618
GC content
- @ref: 30181
- GC-content: 68.7
External links
@ref: 30181
culture collection no.: AS 4.1808, JCM 11884
straininfo link
- @ref: 91561
- straininfo: 134300
literature
- topic: Phylogeny
- Pubmed-ID: 15388728
- title: Nocardia pigrifrangens sp. nov., a novel actinomycete isolated from a contaminated agar plate.
- authors: Wang L, Zhang Y, Huang Y, Maldonado LA, Liu Z, Goodfellow M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.03035-0
- year: 2004
- mesh: Bacterial Typing Techniques, *Culture Media, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, rRNA, Molecular Sequence Data, Nocardia/chemistry/*classification/cytology/*isolation & purification, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30181 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26529 | 28776041 |
| 91561 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID134300.1 |