Strain identifier
BacDive ID: 133512
Type strain: 
Species: Flavobacterium algicola
Strain history: CIP <- 2007, NBRC <- T. Nakagawa, Agriculture Tokyo Univ., Abashiri, Hokkaido, Japan: strain TC2
NCBI tax ID(s): 556529 (species)
version 6
General
@ref: 29245
BacDive-ID: 133512
keywords: aerobe, Bacteria, Gram-negative, 16S sequence, rod-shaped
description: Flavobacterium algicola NBRC 102673 is an aerobe, Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.
NCBI tax id
- NCBI tax id: 556529
- Matching level: species
doi: 10.13145/bacdive133512.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidetes
- domain: Bacteria
- phylum: Bacteroidetes
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium algicola
- full scientific name: Flavobacterium algicola Miyashita et al. 2010
@ref: 29245
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium algicola
type strain: yes
Morphology
cell morphology
- @ref: 29245
- gram stain: negative
- cell length: 1.75 µm
- cell width: 0.75 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29245
- production: no
Culture and growth conditions
culture medium
- @ref: 34225
- name: MEDIUM 72- for trypto casein soja agar
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29245 | positive | growth | 05-25 | |
| 29245 | positive | optimum | 20 | psychrophilic |
| 34225 | positive | growth | 25 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29245 | positive | growth | 5.5-8 |
| 29245 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29245
- oxygen tolerance: aerobe
spore formation
- @ref: 29245
- spore formation: no
halophily
- @ref: 29245
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-3 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29245 | 17234 | glucose | + | carbon source |
| 29245 | 17306 | maltose | + | carbon source |
| 29245 | 29864 | mannitol | + | carbon source |
| 29245 | 37684 | mannose | + | carbon source |
| 29245 | 506227 | N-acetylglucosamine | + | carbon source |
| 29245 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29245 | acid phosphatase | + | 3.1.3.2 |
| 29245 | alkaline phosphatase | + | 3.1.3.1 |
| 29245 | catalase | + | 1.11.1.6 |
| 29245 | cytochrome oxidase | + | 1.9.3.1 |
Sequence information
16S sequences
- @ref: 29245
- description: Flavobacterium algicola gene for 16S rRNA, partial sequence
- accession: AB455265
- length: 1439
- database: nuccore
- NCBI tax ID: 556529
GC content
- @ref: 29245
- GC-content: 33.9
External links
@ref: 29245
culture collection no.: NBRC 102673, CIP 109574, TC 2
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/843809 |
| 20218 | http://www.straininfo.net/strains/843808 |
Reference
| @id | authors | title | doi/url | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 25665 | 10.1099/ijs.0.009365-0 | 19651729 | ||||
| 29245 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28776041 | 25665 | |
| 34225 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7332 |