Strain identifier
BacDive ID: 133026
Type strain: 
Species: Parasaccharibacter apium
Strain Designation: C6
Strain history: <- V. Corby-Harris, USDA/ARS, Tuscon, Arizona USA; C6
NCBI tax ID(s): 1510841 (species)
General
@ref: 24814
BacDive-ID: 133026
DSM-Number: 101884
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Parasaccharibacter apium C6 is a mesophilic bacterium that was isolated from Apis mellifera larvae.
NCBI tax id
- NCBI tax id: 1510841
- Matching level: species
strain history
- @ref: 24814
- history: <- V. Corby-Harris, USDA/ARS, Tuscon, Arizona USA; C6
doi: 10.13145/bacdive133026.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Parasaccharibacter
- species: Parasaccharibacter apium
- full scientific name: Parasaccharibacter apium Corby-Harris et al. 2014
@ref: 24814
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Parasaccharibacter
species: Parasaccharibacter apium
full scientific name: Parasaccharibacter apium Corby-Harris et al. 2014
strain designation: C6
type strain: no
Culture and growth conditions
culture medium
- @ref: 24814
- name: SABOURAND GLUCOSE MEDIUM (DSMZ Medium 1429)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1429
- composition: Name: SABOURAUD GLUCOSE MEDIUM (DSMZ Medium 1429) Composition: SABOURAUD- Glucose-Bouillon 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 24814
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24814
- sample type: Apis mellifera larvae
- host species: Apis mellifera
- geographic location: Tuscon, Arizona
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Arthropoda
- Cat3: #Insecta
Sequence information
16S sequences
- @ref: 24814
- description: Parasaccharibacter apium strain C6 16S ribosomal RNA gene, partial sequence
- accession: KM014167
- length: 1385
- database: ena
- NCBI tax ID: 1510841
Genome sequences
- @ref: 66792
- description: Parasaccharibacter apium C6
- accession: GCA_002917985
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1510841
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 87.804 | no |
| gram-positive | no | 98.156 | no |
| anaerobic | no | 98.476 | no |
| aerobic | yes | 54.517 | no |
| halophile | no | 78.339 | no |
| spore-forming | no | 96.335 | no |
| glucose-util | yes | 72.48 | no |
| thermophile | no | 91.631 | yes |
| motile | yes | 70.148 | no |
| glucose-ferment | no | 79.878 | no |
External links
@ref: 24814
culture collection no.: DSM 101884
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24814 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101884 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101884) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |