Strain identifier
BacDive ID: 132178
Type strain:
Species: Enterobacter hormaechei subsp. xiangfangensis
Strain Designation: 10-17
Strain history: <- T. Hain, Justus-Liebig-Universität, Giessen, Germany <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; 10-17
NCBI tax ID(s): 1296536 (subspecies)
General
@ref: 23967
BacDive-ID: 132178
DSM-Number: 101093
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Enterobacter hormaechei subsp. xiangfangensis 10-17 is an aerobe, mesophilic bacterium that was isolated from Sourdough.
NCBI tax id
- NCBI tax id: 1296536
- Matching level: subspecies
strain history: <- T. Hain, Justus-Liebig-Universität, Giessen, Germany <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; 10-17
doi: 10.13145/bacdive132178.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Enterobacter
- species: Enterobacter hormaechei subsp. xiangfangensis
- full scientific name: Enterobacter hormaechei subsp. xiangfangensis (Gu et al. 2014) Sutton et al. 2018
synonyms
- @ref: 20215
- synonym: Enterobacter xiangfangensis
@ref: 23967
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Enterobacter
species: Enterobacter hormaechei subsp. xiangfangensis
full scientific name: Enterobacter hormaechei subsp. xiangfangensis (Gu et al. 2014) Sutton et al. 2018
strain designation: 10-17
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 65.359 | |
69480 | 99.148 | negative |
colony morphology
- @ref: 62929
- incubation period: 1 day
Culture and growth conditions
culture medium
- @ref: 23967
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
23967 | positive | growth | 30 | mesophilic |
62929 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62929
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.313
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 93.802
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 17997 | dinitrogen | no |
68368 | 16301 | nitrite | yes |
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | NO2 | N2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
23967 | + | + | - | - | + | - | - | - | - | + | - | + | + | - | + | + | + | + | + | + | - | ||
23967 | + | + | - | - | +/- | - | - | - | - | + | - | + | + | - | + | + | + | + | + | + | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
23967 | Sourdough | Heilongjiang Province | China | CHN | Asia | |
62929 | Sourdough | Heilongjiang province | China | CHN | Asia | 2010-06-01 |
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Fermented
taxonmaps
- @ref: 69479
- File name: preview.99_120.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_120&stattab=map
- Last taxonomy: Enterobacteriaceae
- 16S sequence: HF679035
- Sequence Identity:
- Total samples: 13334
- soil counts: 615
- aquatic counts: 1353
- animal counts: 10132
- plant counts: 1234
Safety information
risk assessment
- @ref: 23967
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23967
- description: Enterobacter xiangfangensis partial 16S rRNA gene, type strain 10-17T
- accession: HF679035
- length: 1429
- database: ena
- NCBI tax ID: 1296536
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Enterobacter hormaechei subsp. xiangfangensis LMG27195 | GCA_001729785 | complete | ncbi | 1296536 |
66792 | Enterobacter xiangfangensis strain LMG27195 | 1296536.16 | complete | patric | 1296536 |
66792 | Enterobacter hormaechei xiangfangensis LMG 27195 | 2718217756 | complete | img | 1296536 |
66792 | uncultured Rhodobacteraceae bacterium Loc090721-4m_bin-0421 | GCA_903948065 | contig | patric | 157276 |
GC content
- @ref: 23967
- GC-content: 55.2
External links
@ref: 23967
culture collection no.: DSM 101093, CCUG 62994, LMG 27195, NCIMB 14836
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/897220 |
20218 | http://www.straininfo.net/strains/873216 |
20218 | http://www.straininfo.net/strains/897219 |
literature
- topic: Phylogeny
- Pubmed-ID: 24824638
- title: Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.
- authors: Gu CT, Li CY, Yang LJ, Huo GC
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.064709-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Biotechnology
Reference
@id | authors | title | doi/url | journal | pubmed | catalogue |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23967 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101093 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101093) | |||
62929 | Curators of the CCUG | https://www.ccug.se/strain?id=62994 | Culture Collection University of Gothenburg (CCUG) (CCUG 62994) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
68368 | Automatically annotated from API 20E | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |