Strain identifier
BacDive ID: 132150
Type strain: 
Species: Gilliamella apicola
Strain Designation: wkB1
Strain history: <- NCIMB <- W. Kwong, Department of Ecology and Evolutionary Biology, Yale University, New Haven, USA
NCBI tax ID(s): 1196095 (species)
version 5
General
@ref: 23940
BacDive-ID: 132150
DSM-Number: 104097
keywords: gram-negative, mesophilic, microaerophile, Bacteria, 16S sequence, genome sequence, motile, rod-shaped
description: Gilliamella apicola wkB1 is a microaerophile, mesophilic, gram-negative bacterium that was isolated from gut of honey bee (Apis mellifera.
strain history: <- NCIMB <- W. Kwong, Department of Ecology and Evolutionary Biology, Yale University, New Haven, USA
doi: 10.13145/bacdive132150.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Gammaproteobacteria
- order: Orbales
- family: Orbaceae
- genus: Gilliamella
- species: Gilliamella apicola
- full scientific name: Gilliamella apicola Kwong and Moran 2013
synonyms
- @ref: 20215
- synonym: Gilliamella apicola
@ref: 23940
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Orbales
family: Orbaceae
genus: Gilliamella
species: Gilliamella apicola
full scientific name: Gilliamella apicola Kwong and Moran 2013
strain designation: wkB1
type strain: yes
Morphology
cell morphology
- @ref: 30807
- gram stain: negative
- cell length: 1.5 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30807
- production: yes
Culture and growth conditions
culture medium
- @ref: 23940
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), microaerobic
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 23940 | positive | growth | 37 | mesophilic |
| 30807 | positive | optimum | 37 | mesophilic |
culture pH
- @ref: 30807
- ability: positive
- type: growth
- pH: 6.0-6.5
Physiology and metabolism
oxygen tolerance
- @ref: 30807
- oxygen tolerance: microaerophile
observation
- @ref: 30807
- observation: aggregates in clumps
Isolation, sampling and environmental information
isolation
- @ref: 23940
- sample type: gut of honey bee (Apis mellifera
- host species: Apis mellifera
- geographic location: West Haven
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
Safety information
risk assessment
- @ref: 23940
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 30807 | Gilliamella apicola strain wkB1 16S ribosomal RNA gene, complete sequence | JQ936674 | 1538 | nuccore | 1196095 |
| 23940 | JQ93674 | ena |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gilliamella apicola wkB1 | GCA_000599985 | complete | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB7 | GCA_001693435 | chromosome | ncbi | 1196095 |
| 66792 | Gilliamella apicola DSM 104097 | GCA_003201455 | scaffold | ncbi | 1196095 |
| 66792 | Gilliamella apicola ESL0177 | GCA_003202915 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB178 | GCA_001690705 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola ESL0178 | GCA_003202815 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola W8131 | GCA_007559165 | scaffold | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB112 | GCA_001690685 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola ESL0182 | GCA_003202655 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB72 | GCA_001693745 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB308 | GCA_001690185 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Bif1-4 | GCA_001690535 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola WF3-4 | GCA_001690275 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola W8127 | GCA_007559145 | scaffold | ncbi | 1196095 |
| 66792 | Gilliamella apicola App4-10 | GCA_001690495 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB171 | GCA_001693755 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola P54G | GCA_001690735 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Nev3-1 | GCA_001690435 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Choc6-1 | GCA_001690385 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Occ3-1 | GCA_001690655 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB195 | GCA_001690445 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB292 | GCA_001690235 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N-G5 | GCA_002142265 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N6 | GCA_002141885 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Choc4-2 | GCA_001690355 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola HK2 | GCA_001690265 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB108 | GCA_001690195 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N2 | GCA_002141855 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N-22 | GCA_002142285 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Nev5-1 | GCA_001690895 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola A-12-12 | GCA_002141675 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Choc3-5 | GCA_001690585 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola A-7-12 | GCA_002141655 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Bim1-2 | GCA_001690835 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola App2-1 | GCA_001690255 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Nev6-6 | GCA_001690605 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola A-8-12 | GCA_002141715 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB18 | GCA_001690875 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola A-7-24 | GCA_002141665 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Choc5-1 | GCA_001690595 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola App6-5 | GCA_001690525 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB11 | GCA_000733115 | scaffold | ncbi | 1196095 |
| 66792 | Gilliamella apicola NO6 | GCA_002088795 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Gris3-2 | GCA_001690345 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N-9-4 | GCA_002088895 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola HK7 | GCA_001690795 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Gris1-4 | GCA_001690335 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Occ4-3 | GCA_001690675 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N-12-12 | GCA_002088825 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola NO5 | GCA_002088855 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Aw-17 | GCA_002141595 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N4 | GCA_002141635 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola A-2-24 | GCA_002141565 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola A-1-24 | GCA_002141515 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Fer1-1 | GCA_001690825 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola AM4 | GCA_002141905 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Bim3-2 | GCA_001690575 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Imp1-1 | GCA_001690415 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola wkB30 | GCA_000695585 | scaffold | ncbi | 1196095 |
| 66792 | Gilliamella apicola A-9-12 | GCA_002141745 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola GillExp13 | GCA_001690815 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola A8 | GCA_002141555 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N10 | GCA_002141785 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N-15-12 | GCA_002088905 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola N-28 | GCA_002142345 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola AW11 | GCA_002141815 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola A9 | GCA_002141735 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola AW13 | GCA_002141755 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola NO10 | GCA_002088845 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Fer4-1 | GCA_001690515 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola NO8 | GCA_002088815 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola AM6 | GCA_002141575 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola M6-3G | GCA_001723875 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Imp1-6 | GCA_001690425 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola Fer2-1 | GCA_001690305 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola P46G | GCA_001726005 | contig | ncbi | 1196095 |
| 66792 | Gilliamella apicola strain A-1-24 | 1196095.213 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain A-12-12 | 1196095.221 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain A-2-24 | 1196095.215 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain A-7-12 | 1196095.219 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain A-7-24 | 1196095.220 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain A-8-12 | 1196095.222 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain A-9-12 | 1196095.224 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain A8 | 1196095.214 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain A9 | 1196095.223 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain AM4 | 1196095.230 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain AM6 | 1196095.216 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain AW11 | 1196095.227 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain AW13 | 1196095.225 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain App2-1 | 1196095.379 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain App4-10 | 1196095.390 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain App6-5 | 1196095.392 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Aw-17 | 1196095.217 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Bif1-4 | 1196095.393 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Bim1-2 | 1196095.402 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Bim3-2 | 1196095.394 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Choc3-5 | 1196095.160 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Choc4-2 | 1196095.385 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Choc5-1 | 1196095.395 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Choc6-1 | 1196095.150 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain DSM 104097 | 1196095.342 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain ESL0177 | 1196095.345 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain ESL0178 | 1196095.344 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain ESL0182 | 1196095.343 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Fer1-1 | 1196095.403 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Fer2-1 | 1196095.382 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Fer4-1 | 1196095.391 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain GillExp13 | 1196095.401 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Gris1-4 | 1196095.383 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Gris3-2 | 1196095.384 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain HK2 | 1196095.380 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain HK7 | 1196095.170 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Imp1-1 | 1196095.386 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Imp1-6 | 1196095.387 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain M6-3G strain P46G | 1196095.408 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N-12-12 | 1196095.208 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N-15-12 | 1196095.212 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N-22 | 1196095.232 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N-28 | 1196095.233 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N-9-4 | 1196095.211 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N-G5 | 1196095.231 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N10 | 1196095.226 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N2 | 1196095.228 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N4 | 1196095.218 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain N6 | 1196095.229 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain NO10 | 1196095.209 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain NO5 | 1196095.210 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain NO6 | 1196095.206 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain NO8 | 1196095.207 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Nev3-1 | 1196095.388 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Nev5-1 | 1196095.405 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Nev6-6 | 1196095.396 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Occ3-1 | 1196095.190 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain Occ4-3 | 1196095.397 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain P46G | 1196095.409 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain P54G | 1196095.400 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain W8127 | 1196095.414 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain W8131 | 1196095.415 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain WF3-4 | 1196095.381 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB1 | 1196095.8 | complete | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB108 | 1196095.378 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB11 | 1196095.48 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB112 | 1196095.398 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB171 | 1196095.407 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB178 | 1196095.399 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB18 | 1196095.404 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB195 | 1196095.389 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB292 | 1196095.180 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB30 | 1196095.47 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB308 | 1196095.377 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB7 | 1196095.199 | complete | patric | 1196095 |
| 66792 | Gilliamella apicola strain wkB72 | 1196095.406 | wgs | patric | 1196095 |
| 66792 | Gilliamella apicola DSM 104097 | 2756170265 | permanent | img | 1196095 |
GC content
- @ref: 30807
- GC-content: 33.6
External links
@ref: 23940
culture collection no.: DSM 104097, ATCC BAA 2448, NCIMB 14804
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/887304 |
| 20218 | http://www.straininfo.net/strains/887305 |
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 23940 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104097 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104097) | ||||
| 27138 | 10.1099/ijs.0.044875-0 | ||||||
| 30807 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27138 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |