Strain identifier

BacDive ID: 131566

Type strain: Yes

Species: Vibrio astriarenae

Strain Designation: C7

Strain history: T. Sawabe C7.

NCBI tax ID(s): 1481923 (species)

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General

@ref: 22793

BacDive-ID: 131566

DSM-Number: 101557

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Vibrio astriarenae C7 is a mesophilic bacterium that was isolated from seawater from coral reef.

NCBI tax id

  • NCBI tax id: 1481923
  • Matching level: species

strain history

@refhistory
22793<- T. Sawabe, University of Hokkaido, Japan; C7
67770T. Sawabe C7.

doi: 10.13145/bacdive131566.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio astriarenae
  • full scientific name: Vibrio astriarenae Al-Saari et al. 2016

@ref: 22793

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio astriarenae

full scientific name: Vibrio astriarenae Al-Saari et al. 2016

strain designation: C7

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22793
  • name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22793positivegrowth28mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
22793+-+--+++------------+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
22793seawater from coral reefIriomote-Ishigaki National Park, Okinawa (24° 20.5260' N; 124° 05.6443' E)JapanJPNAsia24.3421124.094
67770Coral reef of Taketomi Island in OkinawaJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Coral reef
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Cnidaria (Corals)

Safety information

risk assessment

  • @ref: 22793
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22793
  • description: Vibrio astriarenae strain C7 16S ribosomal RNA gene, partial sequence
  • accession: KP342514
  • length: 1489
  • database: ena
  • NCBI tax ID: 1481923

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio sp. C7 strain JCM192331001886.3wgspatric1001886
66792Vibrio astriarenae JCM 192332617271036draftimg1481923
67770Vibrio sp. C7 JCM 19233GCA_000755365contigncbi1001886

GC content

  • @ref: 22793
  • GC-content: 46.3
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.55no
flagellatedyes87.656no
gram-positiveno98.701no
anaerobicno95.924no
aerobicyes87.471no
halophileyes64.461no
spore-formingno94.837no
thermophileno99.422no
glucose-utilyes85.618no
glucose-fermentyes88.814yes

External links

@ref: 22793

culture collection no.: DSM 101557, CAIM 1900, JCM 19233, LMG 28701

straininfo link

  • @ref: 89977
  • straininfo: 401121

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22793Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101557Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101557)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
89977Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401121.1