Strain identifier

BacDive ID: 11457

Type strain: Yes

Species: Cohnella cellulosilytica

Strain Designation: FCN3-3

Strain history: <- S Tanasupawat, Chulalonkorn Univ., Thailand

NCBI tax ID(s): 986710 (species)

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General

@ref: 18248

BacDive-ID: 11457

DSM-Number: 26488

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Cohnella cellulosilytica FCN3-3 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, buffalo faeces.

NCBI tax id

  • NCBI tax id: 986710
  • Matching level: species

strain history

@refhistory
18248<- KCTC; KCTC 13645
67771<- S Tanasupawat, Chulalonkorn Univ., Thailand

doi: 10.13145/bacdive11457.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Cohnella
  • species: Cohnella cellulosilytica
  • full scientific name: Cohnella cellulosilytica Khianngam et al. 2012

@ref: 18248

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Cohnella

species: Cohnella cellulosilytica

full scientific name: Cohnella cellulosilytica Khianngam et al. 2012

strain designation: FCN3-3

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30289positive2.1 µm0.35 µmrod-shapedyes
67771rod-shapedyes
67771positive

pigmentation

  • @ref: 30289
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18248CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
18248COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
18248positivegrowth28mesophilic
30289positivegrowth15-30
30289positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30289positivegrowth07-09alkaliphile
30289positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30289aerobe
67771aerobe

spore formation

@refspore formationtype of spore
30289yes
67771yesspore

halophily

  • @ref: 30289
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3 %

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3028922599arabinose+carbon source
3028917234glucose+carbon source
3028917306maltose+carbon source
3028929864mannitol+carbon source
3028937684mannose+carbon source
302894853esculin+hydrolysis
3028917632nitrate+reduction

enzymes

@refvalueactivityec
30289catalase+1.11.1.6
30289cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18248soil, buffalo faecesNakhonnayok provinceThailandTHAAsia
67771From soil, buffalo faecesNakhonnayok provinceThailandTHAAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_46540.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_9809;97_11822;98_30355;99_46540&stattab=map
  • Last taxonomy: Cohnella cellulosilytica
  • 16S sequence: HQ704069
  • Sequence Identity:
  • Total samples: 9
  • soil counts: 4
  • aquatic counts: 2
  • animal counts: 3

Safety information

risk assessment

  • @ref: 18248
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18248
  • description: Cohnella cellulosilytica strain FCN3-3 16S ribosomal RNA gene, partial sequence
  • accession: HQ704069
  • length: 1388
  • database: ena
  • NCBI tax ID: 986710

GC content

@refGC-content
1824858
6777158.0

External links

@ref: 18248

culture collection no.: DSM 26488, KCTC 13645, PCU 32, TISTR 1996, PCU 323

straininfo link

  • @ref: 80694
  • straininfo: 401187

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22003039Cohnella cellulosilytica sp. nov., isolated from buffalo faeces.Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JSInt J Syst Evol Microbiol10.1099/ijs.0.032607-02011Animals, Base Composition, Buffaloes/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/*microbiology, Gram-Positive Endospore-Forming Rods/*classification/genetics/isolation & purification, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, ThailandGenetics
Phylogeny30016228Cohnella kolymensis sp. nov., a novel bacillus isolated from Siberian permafrost.Kudryashova EB, Karlyshev AV, Ariskina EV, Streshinskaya GM, Vinokurova NG, Kopitsyn DS, Evtushenko LIInt J Syst Evol Microbiol10.1099/ijsem.0.0029192018Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Permafrost/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Siberia, *Soil Microbiology, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18248Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26488)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26488
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30289Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2663028776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80694Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401187.1StrainInfo: A central database for resolving microbial strain identifiers