Strain identifier

BacDive ID: 10483

Type strain: Yes

Species: Neisseria sicca

Strain Designation: Berger 6b, 30.016, Q19

Strain history: CIP <- 1989, S.J. Barrett, Leicester Univ., UK: strain Q19 <- NRL: strain 30.016

NCBI tax ID(s): 547045 (strain), 490 (species)

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General

@ref: 7155

BacDive-ID: 10483

DSM-Number: 17713

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Neisseria sicca Berger 6b is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from pharyngeal mucosa.

NCBI tax id

NCBI tax idMatching level
490species
547045strain

strain history

@refhistory
7155<- CCUG <- LMG <- NRL
122600CIP <- 1989, S.J. Barrett, Leicester Univ., UK: strain Q19 <- NRL: strain 30.016

doi: 10.13145/bacdive10483.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Neisseriaceae
  • genus: Neisseria
  • species: Neisseria sicca
  • full scientific name: Neisseria sicca (von Lingelsheim 1908) Bergey et al. 1923 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Diplococcus siccus

@ref: 7155

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Neisseria

species: Neisseria sicca

full scientific name: Neisseria sicca (von Lingelsheim 1908) Bergey et al. 1923

strain designation: Berger 6b, 30.016, Q19

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shape
69480negative99.995
122600negativecoccus-shaped

colony morphology

@refincubation period
71552-3 days
122600

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7155COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
36569MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122600CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
7155positivegrowth37mesophilic
36569positivegrowth30mesophilic
47891positivegrowth37mesophilic
122600positivegrowth22-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7155microaerophile
47891microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12260017632nitrate-reduction
12260016301nitrite+reduction
12260035020tributyrin-hydrolysis
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 122600
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12260035581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
7155catalase+1.11.1.6
7155cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377proline-arylamidase+3.4.11.5
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
122600oxidase+
122600beta-galactosidase-3.2.1.23
122600alcohol dehydrogenase-1.1.1.1
122600DNase-
122600catalase+1.11.1.6
122600gamma-glutamyltransferase+2.3.2.2
122600lysine decarboxylase-4.1.1.18
122600ornithine decarboxylase-4.1.1.17
122600urease-3.5.1.5

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7155++++-----++--
7155++++-----++--
7155-++++-----++-
7155-++++-----++-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7155pharyngeal mucosaUnited KingdomGBREurope
47891Human pharyngeal mucosa,healthy individual
122600Human, Pharyngeal mucosa

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Oral cavity and airways

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
71552Risk group (German classification)
1226001Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7155
  • description: Neisseria sicca 16S rRNA gene, partial
  • accession: AJ247248
  • length: 457
  • database: ena
  • NCBI tax ID: 547045

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neisseria sicca DSM 17713GCA_014054945completencbi490
66792Neisseria sicca ATCC 29256GCA_019334765completencbi547045
66792Neisseria sicca ATCC 29256GCA_000174655contigncbi547045
66792Neisseria sicca ATCC 29256547045.3wgspatric547045
66792Neisseria sicca strain DSM 17713490.255completepatric490
66792Neisseria sicca ATCC 29256645058748draftimg547045

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno93.36no
gram-positiveno98.225no
anaerobicno96.559yes
aerobicno95.908yes
halophileno79.06no
spore-formingno96.848no
motileno89.87no
thermophileno99.328no
glucose-utilyes69.098no
glucose-fermentno86.258no

External links

@ref: 7155

culture collection no.: DSM 17713, ATCC 29256, ATCC 49276, CCUG 23929, CCUG 24959, LMG 5290, NRL 30016, LMG 5312, NRL 30,016, CIP 103345

straininfo link

  • @ref: 79760
  • straininfo: 298122

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7155Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17713)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17713
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36569Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15132
47891Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 23929)https://www.ccug.se/strain?id=23929
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68377Automatically annotated from API NH
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
79760Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID298122.1StrainInfo: A central database for resolving microbial strain identifiers
122600Curators of the CIPCollection of Institut Pasteur (CIP 103345)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103345