Optimization and Characterization of Poly [ R ] hydroxyalkanoates of Pseudomonas aeruginosa

Polynucleotides, polypeptides, polysaccharides are the polymers seen in living organisms. Many biopolymers are important reserve compounds that are stored in the cytoplasm as insoluble inclusions. Likewise Polyhydroxyalkanoates are natural, renewable biopolyester accumulated in bacteria in the presence of limited nitrogen sources and higher concentration of carbon source. In this study, PHA accumulation pattern of Pseudomonas aeruginosa was studied. The PHA was optimized for various carbon sources, incubation time, pH and temperature. Analytical techniques like FTIR and GC-MS were done to determine the types of monomer present in the biopolyester.

Polyhydroxyalkanoate(PHA) are biopolyesters accumulated in microorganism when bacterial cells are grown in excess carbon sources and other nutrients at limited conditions.Polyhydroxy alkanoates (PHA) are biopolymers accumulated when bacterial cells are grown in excess carbon source and other nutrients at limited conditions as energy source at late stationary phase and reduces mortality rate 1,2 .PHAs are normally found as insoluble inclusions in cytoplasm thus known as PHA granules and these granules contain 97.5% PHA, 2% proteins and small amounts of lipids.PHA granule associated proteins plays an important role in PHA synthesis and granule formation 3 .The maximum yield of PHAs depends on several factors including stability and safety of the organism, growth and PHA accumulation rates, achievable cell densities and PHAs content, extractability of the polymer, molecular weight of accumulated PHA, range of utilizable carbon sources, cost of carbon sources and other components of the medium and occurrence of the byproducts 4 .Major problem associated with the production of PHAs from bacteria are its cultural optimization studies.Optimization of the suitable carbon source in the medium is an important criteria for high production of PHA.By changing the carbon source and also the concentration of carbon source used in the fermentation process, it is possible to produce different PHAs with varied monomer content ranging from thermoplastic to rubbery polymers 2 .The physical parameters like incubation time, temperature and pH are also to be considered in PHA production studies.Microbial PHA production is highly influenced by pH of cultivation medium 5 .In the earlier times the most common analytical technique used for PHA estimation was gravimetric method 6 .Several methods are now available for determination of the PHA contents of microorganisms, the composition of PHAs, and the distribution of the monomer units.The gas chromatographic (GC) identification of PHA components was later proposed by Braunegg et al., 7 .This method involves simultaneous extraction and methanolysis of PHA, in mild acid or alkaline conditions, to form hydroxyalkanoate methylesters which are then analysed by GC.This method is rapid (4 h), sensitive, reproducible and requires only small amount of samples.Other analytical techniques used for confirmation of PHA are FTIR, UV spectrometry.
There are two groups among the PHAs producing bacteria on the basis of number of carbon atoms present in monomer units 8 i.e Shortchain length PHAs(3-5 carbon atoms) and medium chain length PHAs(6-4 carbon atoms) 9 .Most organisms synthesize either SCL-PHA primarily having 3HB units or MCL-PHA having 3-hydroxy octanoate.The co-polymers of PHA are also produced which varies according to substrates used.These co-polymers of SCL-PHA and MCLPHA has got more tensile strength and other mechanical properties.PHA can be synthesized either by chemical methods or by biological synthesis.The biological synthesis alone yields much higher molecular weight than chemical method as these PHA can also be produced by chemical method.The biosynthesis of different types of PHAs significantly depends on the chosen microorganisms, fermentation condition and different carbon sources.The vast majority of microbes synthesize either SCL-PHA containing primarily 3-hydroxyoctanoate (3HO) and 3hydroxydecanoate (3HD) as the major monomers 2,9,10

Isolation of the bacterial strain
The bacterial strain were isolated from the dairy waste and soil.1g of soil sample were serially diluted.After serial dilution, 1 ml of the culture was introduced into sterile nutrient agar.Plates were incubated for 24 hours and observed for colony formation.The organisms grown were inoculated into cetrimide agar and incubated for 24 hours at 37 0 C. Thus obtained pure culture was stored in nutrient agar slant containing 25% glycerol solution at -20 °C for further use.

Production and extraction of PHA
The organism was inoculated into minimal media containing (gl -1 ) K 2 HPO 4 -3g, Na 2 HPO 4 -6g, NH 4 Cl -2g, NaCl -5g, MgSO 4 -1g, CaCl 2 -0.1g and FeCl 3 -0.06gand it was incubated at 37°C for 48 hours under aerobic agitation of 150 rpm.The fermented culture was centrifuged at 10,000rpm for 25 minutes at 4 °C.The cell pellet was washed twice with distilled water.Cell pellet was dried in Hot air oven.3ml of 4% Sodium hypochlorite and 7ml of Chloroform was added to 1g dried biomass and agitated vigorously.The mixture was then centrifuged at 2500rpm for 5 minutes to get three separate layers.The bottom layer contains chloroform with dissolved PHAs.PHA was obtained by adding methanol drop-wisedrop to get white precipitate.The precipitate was collected and added with 1ml Chloroform and transferred to an eppendorf tube, air-dried to get pure PHA.PHA % was calculated using dry weight of PHA and Cell Dry Weight 11 .

Optimization of PHA production
The production of PHA was optimized with respect to five different carbon source such as glucose, fructose, maltose, sucrose and lactose at various concentrations 12,13 .The optimum conditions like incubation time, pH and temperature for PHA accumulation were also determined.

Characterization of PHA UV spectroscopy
The PHA was added with 10 ml H 2 SO 4 and heated at 100°C for 10 min.Absorbance between 200 and 400 nm was recorded in UV spectroscopy, peak between 230 and 240 nm confirms the presence of PHA 14 .

Thin layer chromatography
The presence of PHA was confirmed by thin layer chromatography based on the method of Panda et al., 15 .

FTIR
The extracted PHA was dissolved in chloroform and Infrared spectra (IR) (4000 to 400 cm -1 ) were recorded on polymer films cast from chloroform solution onto KBr plates using FTIR (Shimadzu, DR-800) at 27°C 16 .

GC-MS analysis
GC analysis of powdered PHA was carried out by the method described by Brandl et al., 17 .The 2 methyl esters were analyzed by GC clarus 500 Perkin Elmer detector in a 30m x 0.25 mm ID x 1ìm df capillary column was used.Helium (1 ml/ min) was used as carrier gas.The injector and detector are at 250 °C and 200°C respectively.

Isolation and identification of organism
The isolated organism was found to be Pseudomonas aeruginosa as it was able to produce pigment on cetrimide agar (Fig. 1).A similar study was done by Bhuwal et al., 18 who isolated PHA producing organism from cardboard manufacturing industry waste water.
Pseudomonas aeruginosa accumulated more PHA in glucose containing medium (Fig. 2).Nisha et al., 16 also found Pseudomonas putida to accumulate more PHA in glucose containing medium only.Highest accumulation was observed at 48 hours in minimal media.The organism was found to accumulate higher percentage of PHA in glucose containing medium.PHA producing bacteria can be divided into two groups based on the culture media .In the first group ,the bacteria accumulates PHA at exponential phase only if there is a limited amount of nutrients (eg, Pseudomonas oleovorans) 19 .The second group, accumulates PHA during growth and it does not requires nutrient limitation(e.g.recombinant E.coli) 20 .All the organisms are tends to accumulate PHA at the stationary phase 12 .Even Jenifer et al., 13 found Agrobacterium tumefaciens SU-11 to accumulate at 48h of incubation.But this was contradictory to the result of Nisha et al., 16 who found Pseudomonas putida SU-8 to accumulate in early log phase.Pseudomonas aeruginosa was found to accumulate higher concentration of PHA at pH 8. Samrot et al., 12 and Nisha et al., 16 found Enterobacter cloacae SU-1 and Pseudomonas putida SU-8 to accumulate PHA near pH7 (Fig. 4).Pseudomonas aeruginosa was found to accumulate higher concentration of PHA at 40 0 C (Fig. 5).Optimal condition for PHA accumulation by Pseudomonas aeruginosa were at glucose containing medium, pH 8, temperature at 40 0 C. A similar study on optimization of PHA was done by Prasad.and Sethi 21 , where they found Pseudomonas sp to accumulate maximum PHA at pH-7, temperature 30°c in 2% carbon source.
Peak was obtained between 220 and 240 nm and confirmed the presence of PHA which indicated the presence of ester group.Even Nair et   and OH groups (Fig. 6).This is on par with the result of Nisha et al., 16

CONCLUSION
Pseudomonas aeruginosa was found toaccumulate more PHA at 48h incubation at 40°C in 3g/100ml in glucose containing medium at pH-8 GC analysis of PHA of Pseudomonas aeruginosa to possess monomers of 3-hydroxytetradecatrienoate and 3-hydroxyhexadecadienoate.